Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10733 172 6e-38 seq48246 98.7 1e-15 seq2660 98.7 1e-15 >seq10733 Length=171697 Score = 172 bits (190), Expect = 6e-38 Identities = 228/313 (73%), Gaps = 4/313 (1%) Strand=Plus/Plus Query 48270 TTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAA 48329 || ||| ||||| ||||||| || | || || | ||||| |||||||||||||||||| Sbjct 126634 TTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAA 126693 Query 48330 TATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTG 48389 || | || | | | ||||||| ||||| ||||||||||| | ||||| || |||||| Sbjct 126694 TACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTG 126753 Query 48390 TTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAA 48449 ||||| |||| | ||| || || | |||||| |||| |||| || | | || Sbjct 126754 TTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGT 126813 Query 48450 CTTCCACTAGCTCTTATATTA-CTA-ATTGAAATACCTATACCACCTGCCATTTTAGATA 48507 | || |||||||||||| | || |||| | || |||||||| || |||| | Sbjct 126814 GTACCCCTAGCTCTTATACAATGTACATTG--AGTCCAATACCACCAGCTGATTTACTAA 126871 Query 48508 TTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTA 48567 | || ||||| | ||| | ||||||||||| |||| |||||||| || |||| ||| Sbjct 126872 TGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGTTA 126931 Query 48568 ATAGAAAACAACT 48580 | ||||||||||| Sbjct 126932 ACAGAAAACAACT 126944 Score = 111 bits (122), Expect = 2e-19 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 47312 ATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGT 47371 |||||||||||| | |||||| ||||| || | ||||| | |||| ||||| | || Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751 Query 47372 ATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGA 47431 ||||||||||||||||||||||||||| | || || || || || ||||| ||||| | Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811 Query 47432 TGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCA 47491 |||| || || ||| || ||||| | ||| |||| | ||| Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCA 125871 Query 47492 ATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||||| | ||| | || ||||||||| | ||| ||||| | ||| Sbjct 125872 ATCCCATAAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAAT 125919 Score = 109 bits (120), Expect = 6e-19 Identities = 182/261 (70%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 |||||||||||| | || ||| | || | || | |||||| |||||||| |||| Sbjct 127014 CTAGACATTTGCTGTTGCATAGTGCATGCAGAGAAAAGTGTTGGGGATGCATGTGTAAAG 127073 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATA 48698 | |||||||| || ||||| ||||| || || ||| || || | || || Sbjct 127074 TAACGTTCTGATAAAAAGTTATAAGTTTCTATGACTTTATCAATGTCTTCACGGTGGATG 127133 Query 48699 CCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTC 48758 | | | || | ||||||||||| |||||| ||||| |||| ||| |||||||| Sbjct 127134 GCAACTGCAACTCTCATTAACATATGTTGAGGCCTTTCGACAACTTTTCCCTTTATTTTT 127193 Query 48759 AAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTAT 48816 || ||||| | | || | ||||| ||||||||||| || || ||||| || ||| Sbjct 127194 AATAGATAACTTCTCTCAAGAGTTTTGAAACCAAAATAATTATAACTGAAA--TCTCTAT 127251 Query 48817 CATTAATAATTGATGAATTTA 48837 ||| ||| |||| ||||||| Sbjct 127252 CATAAATTATTGCAGAATTTA 127272 Score = 102 bits (112), Expect = 9e-17 Identities = 148/207 (71%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||| | || || || || | ||| ||||| || || |||| ||| ||| | Sbjct 126079 ACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAA 126138 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 ||||||| ||||| | ||| | ||||| ||||| || || || | |||||||||||| Sbjct 126139 TATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGATTC 126198 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAG 48042 ||| ||| || ||||| |||||||||||||| ||||| ||||| | || | Sbjct 126199 GATTTACG--GTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGG 126256 Query 48043 ATTCAATGATAGATTTCCAAACAGTCC 48069 ||| |||| | |||| | ||||| Sbjct 126257 CAACAAGTATAGCTGTCCATA-AGTCC 126282 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 |||| || | |||||||||||||||||||||||||| | | ||||| |||||||||| Sbjct 127472 CACTGAAACTCTTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATA 127531 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 |||||||||||| || |||| || ||| ||| | |||| ||||| | ||||| Sbjct 127532 CAGCATAATCTGGGTGCTTTGTAGT-CATAGTAGCTGCAGTTTCAGCTGCAAGATTATCT 127590 Query 49035 AATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAAC 49075 ||||| || || ||||| | ||||| || | ||| || Sbjct 127591 AATTCAACTGTGGTAACACCCGAATATAAACCATTAATGAC 127631 >seq48246 Length=3565318 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 19448 CTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGT 19507 ||||||| | ||| |||||||| || ||||| || || || ||||||||||||||||| | Sbjct 2532508 CTTTAGAGAGATCCACTTCTTCCACAGTCCAGAAGGACGCTTCTGCTTTTTTATACATTT 2532567 Query 19508 TCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAA 19567 ||| || ||| | | || |||||||||| ||||||||| || || ||||| || | Sbjct 2532568 GCCAAATGTCAGGCCACTGAATAGGAAATACAACAAATCTGTTAGGGTTCTCTTTGAGTA 2532627 Query 19568 TAGGTTC 19574 ||||| Sbjct 2532628 ATGGTTC 2532634 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| |||||| ||||||||||||| ||||| |||| ||||||||||| || || ||||| Sbjct 2531431 CATCACTCCCCATTTTTGATATTCGCCAACTTTTTTCTCAAAGAAATTCGTCTTACCCTC 2531490 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 ||| ||||| ||||| || || || ||||||| Sbjct 2531491 TAACGATATGTGCTCCATGAAGTCGAACGGATTTT 2531525 Score = 86.0 bits (94), Expect = 7e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || || ||||| |||||||||||| || | || || || || | ||||| Sbjct 2532217 TATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGTTCTCCATCGCTACTTGAAAG 2532276 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || || ||||| | ||| ||||| | || ||||| | ||||| ||| || | ||| Sbjct 2532277 CCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGCTAAATCGTTCTACGAGATTC 2532336 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 |||||||| || || || || || || ||||||||||| || ||||| ||||| Sbjct 2532337 TCATTAACGATACCGTCGGATGCCGCGAAGAATGCTAATACGTGCGATATAAAGTGTTTC 2532396 Query 19414 TC 19415 || Sbjct 2532397 TC 2532398 >seq2660 Length=453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 120/161 (75%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 |||| || | |||||||||||||||||||||||||| | | ||||| |||||||||| Sbjct 28 CACTGAAACTCTTTTTTGTTTCTTTATGAAGATTAGAGACTGCAATTCTTGCAGCTAATA 87 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 |||||||||||| || |||| || ||| ||| | |||| ||||| | ||||| Sbjct 88 CAGCATAATCTGGGTGCTTTGTAGT-CATAGTAGCTGCAGTTTCAGCTGCAAGATTATCT 146 Query 49035 AATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAAC 49075 ||||| || || ||||| | ||||| || | ||| || Sbjct 147 AATTCAACTGTGGTAACACCCGAATATAAACCATTAATGAC 187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561753491027520