Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq12473 120 2e-21 seq16708 116 3e-20 >seq12473 Length=36767 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| ||||| || |||||||| || || |||||| | || ||||| ||||| | Sbjct 22227 ATGCTGTAATTACTGTCCCTGCATATTTCAACGATTCACAAAGACAGGCTACCAAAGACG 22168 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | ||||| || |||||||| ||| | | || |||||||| || |||||||| | Sbjct 22167 CTGGTCAAATTGCCGGTCTTAATGTACTTAGAGTAATTAATGAACCGACGGCTGCTGCCC 22108 Query 550518 TTGCATATGGACTTGATAA 550536 ||||||||||| | || || Sbjct 22107 TTGCATATGGAATGGACAA 22089 >seq16708 Length=1145218 Score = 116 bits (128), Expect = 3e-20 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 || |||||||||||||| || || |||||| ||||||||||||| || || | | Sbjct 1010798 AGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGT 1010857 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 |||||| ||||||||||| || || || |||| ||| || || ||||||||||||||| Sbjct 1010858 CCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCT 1010917 Query 563377 TTATCTTGAATTTT 563390 || |||||||| || Sbjct 1010918 TTGTCTTGAATCTT 1010931 Score = 111 bits (122), Expect = 1e-18 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || || | |||||| ||| |||||| ||| |||||||||| |||||||| | ||| Sbjct 654742 AGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCC 654801 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || ||||| || || || || || | | |||||||||||||||||||| || ||||| Sbjct 654802 TCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCC 654861 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGT 563441 || ||||| ||| || || || ||||| | | || ||| || || | ||| Sbjct 654862 TGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC-TTCCAGGGTGATAGT 654920 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || ||||| || |||||||| ||||| Sbjct 654921 TTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 109 bits (120), Expect = 4e-18 Identities = 160/222 (72%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| || ||||||||||| ||| | ||| || || ||||||| || || Sbjct 1009885 GAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGG--ATGTTATAATCAGAAAGTGTG 1009942 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||| | || ||||| || || || | ||||||||| || || ||||||||| Sbjct 1009943 CGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGAATTCCT 1010002 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAG 563432 ||||| ||||||||||| ||| || || || ||||| | | || ||| | Sbjct 1010003 TCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGAC-TTCCAA 1010061 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 || | ||| || ||||| ||||| ||||| ||||| ||||| Sbjct 1010062 TGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103 Score = 105 bits (116), Expect = 5e-17 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || || |||||||| || ||| || ||||||||||||| || || | | | Sbjct 1011029 CGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA 1011088 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 ||||| ||||||||||| || || || | || ||| || || ||||||||||||||||| Sbjct 1011089 TCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTG 1011148 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC---AGTGTGAGTACATTCGAGAGTA 563436 || |||||||| || || |||||| ||||| || | | || ||||| || Sbjct 1011149 TCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCA--AC-CTCGAGGGTT 1011205 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| | ||| || || ||||| ||||| Sbjct 1011206 ATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 102 bits (112), Expect = 7e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCT 563322 || || | |||||| ||| || || ||| |||||||||| |||||||| | ||| Sbjct 654286 AGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCC 654345 Query 563323 TCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCT 563382 || ||||| || || || || || | | |||||||||||||||||||| || ||||| Sbjct 654346 TCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCC 654405 Query 563383 TGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGT 563441 || ||||| ||| || || || ||||| | | || ||| || || | ||| Sbjct 654406 TGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGAC-TTCCAGGGTGATAGT 654464 Query 563442 TTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || || ||||| || |||||||| ||||| Sbjct 654465 TTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 102 bits (112), Expect = 7e-16 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 || || || || || ||||||||||| ||| | | ||| || || ||||| | || | Sbjct 1010111 CTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGG--ATGTTATAATCGGAAAGCG 1010168 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 ||||| |||||| ||||||||||| || || || | || ||| || || |||||||||| Sbjct 1010169 TTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTC 1010228 Query 563372 CTTCTTTATCTTGAATTTT 563390 ||||||| || |||||||| Sbjct 1010229 CTTCTTTGTCCTGAATTTT 1010247 Score = 102 bits (112), Expect = 7e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || || || |||||||| || ||| || ||||||||||||| || || Sbjct 1011251 CTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTG 1011310 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||| ||||||||||| || || || | || ||| || || |||||||||||| Sbjct 1011311 CGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCT 1011370 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 ||||| || |||||||| || || |||||| ||||| Sbjct 1011371 TCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATC 1011411 Score = 98.7 bits (108), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 563260 CGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAA 563319 || || || |||||||| || ||| || ||||||||||||| || || | | | Sbjct 1010573 CGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA 1010632 Query 563320 TCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTA 563379 || || || || ||||||||||| || | || ||| ||||| ||||| ||||| ||||| Sbjct 1010633 TCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTG 1010692 Query 563380 TCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAAC 563438 || |||||||| || || |||||| ||||||| | || ||| | || | Sbjct 1010693 TCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGAC-TTCCAATGTGAT 1010751 Query 563439 AGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||| || ||||| | ||||| || ||||| ||||| Sbjct 1010752 AGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 1010787 Score = 96.9 bits (106), Expect = 3e-14 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 || || |||||||| || ||| ||||| || |||||||||| |||||||| | || Sbjct 654514 AGGACCAGATGAAGCGTGGACTCCTTTTGG--ATGTTGTAATCAGATAGAGTTCGTCCAT 654571 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | || | || || || || || || | | |||||||||||||||||||| || || | Sbjct 654572 CCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGT 654631 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACA 563439 | || ||||| ||| || ||| || || |||| | | | | ||| || || | Sbjct 654632 CCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAG-GCTTCGACTTCCAGGGTGATG 654690 Query 563440 GTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || ||||| || |||||||| ||||| Sbjct 654691 GTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725 Score = 91.5 bits (100), Expect = 1e-12 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 || || |||||||| || ||| ||||| || |||||||||| |||||||| | || Sbjct 653830 AGGACCAGATGAAGCGTGGACTCCTTTTGG--ATGTTGTAATCAGATAGAGTTCGTCCAT 653887 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | || | || || || || || || | | |||||||||||||||||||| || || | Sbjct 653888 CCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGT 653947 Query 563381 CTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACA 563439 | || ||||| ||| || ||| || || |||| | | | | ||| | || | Sbjct 653948 CCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAG-GCTTCGACTTCCAAGGTGATG 654006 Query 563440 GTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || || ||||| || |||||||| ||||| Sbjct 654007 GTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041 Score = 86.0 bits (94), Expect = 5e-11 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 563263 AGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAAT 563320 || || |||||||| || ||| ||||| || |||||||||| ||||| | | || Sbjct 654970 AGGACCAGATGAAGCGTGGACTCCTTTTGG--ATGTTGTAATCAGAGAGAGTACGTCCAT 655027 Query 563321 CTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTAT 563380 | || ||||| || || || || || | | ||||||||||||||||||||||| |||| Sbjct 655028 CCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTAT 655087 Query 563381 CTTGAATTTT 563390 | || ||||| Sbjct 655088 CCTGGATTTT 655097 Score = 86.0 bits (94), Expect = 5e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 || || || || || |||||||| || ||| || ||||||||||||| || || Sbjct 1010339 CTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTG 1010398 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | |||||| ||||||||||| || || || |||| ||| || || ||||| ||||| Sbjct 1010399 CGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCC 1010458 Query 563374 TCTTTATCTTGAATTTT 563390 ||||| || ||||| || Sbjct 1010459 TCTTTGTCCTGAATCTT 1010475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4026621736098320