Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_016571.1
Length=284757
Score E
Sequences producing significant alignments: (Bits) Value
seq11667 197 3e-45
seq16755 87.8 3e-12
>seq11667
Length=326
Score = 197 bits (218), Expect = 3e-45
Identities = 237/320 (74%), Gaps = 4/320 (1%)
Strand=Plus/Minus
Query 208532 GTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCTACG 208591
||| || || || | || |||||||| ||||| || | |||||| || |||||| ||
Sbjct 320 GTCGTCGAACACCAGCGACGGATCGTTGACGATATTGCGGATGATATGGGTATAGGAGCG 261
Query 208592 ACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGA 208651
|| ||||||||||| || ||||||| || |||| ||||| ||||| || || ||
Sbjct 260 CGAATGTATGGTTTCAGAAAACGCCCAGGTTTCCACCCAGGTTTCTAGCTCCGGTATCGA 201
Query 208652 G--CAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCAGTAGTGTC 208709
|||| || | || ||||| || || | ||||||||||| || ||||| || |||
Sbjct 200 AATCAGA--GGCAATAGCGCAACATTGGGGCTGCGGCCCTGGATTGAATCCAGCAGCGTC 143
Query 208710 TGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATGTAGTCA 208769
|||||||| |||||||| || || | ||||| ||||| || || | ||| || ||
Sbjct 142 TGATATTTGAGGTTACTAATAAAGATATGTTTTTCGTGCTCCGGCAGCGCCTGATAATCG 83
Query 208770 ATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCA 208829
|| || || || || |||||||| ||||| ||||||||||| || || | ||||||||||
Sbjct 82 ATGCGATCGCGAGACACATCTACCTCTTCCGGACGCCAGAAAAACGACAATTGTTTCTCA 23
Query 208830 ATGAGTTTCTCAAAGATCTC 208849
|| || || ||||| || ||
Sbjct 22 ATCAGCTTTTCAAATATGTC 3
>seq16755
Length=287
Score = 87.8 bits (96), Expect = 3e-12
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand=Plus/Plus
Query 16034 AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCT 16093
||| |||||||||||| || ||||||||| ||||| ||||||||||||||| | ||||
Sbjct 87 AAAATATGGTGGCCCCTGCTGGACTTGAACCAGCGACTAAGCGATTATGAGTCGCTTGCT 146
Query 16094 CTAACCGTCTGAGCTACGGGGCC 16116
|||||| |||||||| ||| ||
Sbjct 147 CTAACC-ACTGAGCTAAGGGACC 168
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 910518497229760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |