Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_016571.1 Length=284757 Score E Sequences producing significant alignments: (Bits) Value seq11667 197 3e-45 seq16755 87.8 3e-12 >seq11667 Length=326 Score = 197 bits (218), Expect = 3e-45 Identities = 237/320 (74%), Gaps = 4/320 (1%) Strand=Plus/Minus Query 208532 GTCATCAAAGACAATGGAAGGATCGTTAACGATGTTCCTGATGATGTGAGTATAGCTACG 208591 ||| || || || | || |||||||| ||||| || | |||||| || |||||| || Sbjct 320 GTCGTCGAACACCAGCGACGGATCGTTGACGATATTGCGGATGATATGGGTATAGGAGCG 261 Query 208592 ACTGTGGATGGTTTCAGAGAAGCCCCAGGTCTCAGCCCATGTTTCCAGCTCTGGGATAGA 208651 || ||||||||||| || ||||||| || |||| ||||| ||||| || || || Sbjct 260 CGAATGTATGGTTTCAGAAAACGCCCAGGTTTCCACCCAGGTTTCTAGCTCCGGTATCGA 201 Query 208652 G--CAGATCGGGAGTAATGCAACGTTTGGACCACGGCCCTGGATAGAGTCCAGTAGTGTC 208709 |||| || | || ||||| || || | ||||||||||| || ||||| || ||| Sbjct 200 AATCAGA--GGCAATAGCGCAACATTGGGGCTGCGGCCCTGGATTGAATCCAGCAGCGTC 143 Query 208710 TGATATTTCAGGTTACTGATGAACAGGTGTTTCTCGTGATCTGGTAAAGCCATGTAGTCA 208769 |||||||| |||||||| || || | ||||| ||||| || || | ||| || || Sbjct 142 TGATATTTGAGGTTACTAATAAAGATATGTTTTTCGTGCTCCGGCAGCGCCTGATAATCG 83 Query 208770 ATACGGTCACGGGAGACATCTACTTCTTCAGGACGCCAGAAGAAAGAAAGTTGTTTCTCA 208829 || || || || || |||||||| ||||| ||||||||||| || || | |||||||||| Sbjct 82 ATGCGATCGCGAGACACATCTACCTCTTCCGGACGCCAGAAAAACGACAATTGTTTCTCA 23 Query 208830 ATGAGTTTCTCAAAGATCTC 208849 || || || ||||| || || Sbjct 22 ATCAGCTTTTCAAATATGTC 3 >seq16755 Length=287 Score = 87.8 bits (96), Expect = 3e-12 Identities = 70/83 (84%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 16034 AAATTATGGTGGCCCCGGCGTGACTTGAACACGCGACCAAGCGATTATGAGTCACCTGCT 16093 ||| |||||||||||| || ||||||||| ||||| ||||||||||||||| | |||| Sbjct 87 AAAATATGGTGGCCCCTGCTGGACTTGAACCAGCGACTAAGCGATTATGAGTCGCTTGCT 146 Query 16094 CTAACCGTCTGAGCTACGGGGCC 16116 |||||| |||||||| ||| || Sbjct 147 CTAACC-ACTGAGCTAAGGGACC 168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 910518497229760