Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq3379 122 3e-23 seq14305 84.2 7e-12 >seq3379 Length=438 Score = 122 bits (134), Expect = 3e-23 Identities = 126/165 (76%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 26106 CACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCT 26165 ||| ||||| |||||||| || || || | |||||||| ||||| ||| |||||| Sbjct 2 CACCACGCGGTGCCATTCCGTTTTCTCCTTTGTCTCGCCGGTTTGCTTGTCGCGCCAGCT 61 Query 26166 TTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTC 26225 || || || || | ||||||||||| || || || ||||||||||| || |||| || Sbjct 62 CTCCGAAGTGGCCAGCGTAATGTTGGCTACCGCACCACCATTAGGCATATAGCGGACTTC 121 Query 26226 TGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 ||||| | |||||||| ||||| || || |||||||| ||||| Sbjct 122 CGGATCCTGGCCCAGGTTTCCGACTAGAATCACTTTATTAACGCC 166 >seq14305 Length=304 Score = 84.2 bits (92), Expect = 7e-12 Identities = 106/145 (73%), Gaps = 3/145 (2%) Strand=Plus/Plus Query 25945 CCGATCATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACG 26004 |||| ||| |||||||| ||||| || |||||||||| ||| ||||| ||||| || Sbjct 160 CCGAGCATTTGCATGGTGCCGCCCACATTGACCACAACTTCGGTGGTATAGCGATCCTGA 219 Query 26005 CCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCT 26061 ||| || ||| ||||||||||| | ||| ||||| || || || || || ||| Sbjct 220 CCGCTCTGGTCCTGCCACTTGCGGGTCTGCAGCGATCCCTCGATATACACTTGGGAGCCT 279 Query 26062 TTCTTCAGGTACTCGCCCGCGATCT 26086 || ||| || |||||| ||| || Sbjct 280 TTACGCAGATATTCGCCCACGACCT 304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159721630330288