Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_018088.1 Length=104936 Score E Sequences producing significant alignments: (Bits) Value seq12851 140 2e-28 >seq12851 Length=316 Score = 140 bits (154), Expect = 2e-28 Identities = 214/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 71236 CTAGATTCAATTAATGCCTCTTCAAGTTCAATTGTTAAGTATGTATCCAAACGTGCAGGT 71295 || || || ||||| || | || || | ||||| || ||||||||| | || || || Sbjct 1 CTTGACTCCATTAACGCTACCTCCAGCGCGATTGTAAAATATGTATCCCAGCGCGCCGGG 60 Query 71296 ATCGGTATCAATGTTGGCAAAATTCGTGCATTAGGAAGTCCTATACGCAATGGTGAAGCA 71355 || || ||||||| ||| || || || || || || || || ||| || ||||| Sbjct 61 ATAGGCATCAATGCCGGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCT 120 Query 71356 GTTCATACTGGTTTAATACCATTCTTAAAGCATTTCCAAACAGCAGTCAAATCTTGCTCT 71415 | ||||| |||| || || |||| || |||||||| || || |||||||| || ||| Sbjct 121 TTCCATACCGGTTGTATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCT 180 Query 71416 CAGGGAGGCTTACGTGGTGGTGCTGCTACAGCGTTCTACCCTATGTGGCATTTAGAAGTT 71475 ||||| ||| | || || || || || || |||||| |||||||||||||| || | Sbjct 181 CAGGGCGGCGTGCGCGGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATC 240 Query 71476 GAAAGCCTTTTAGTATTGAAAAATAACAAAGGTGTTGAAGATAACCGTGTACGTCATTTA 71535 ||||| || | || | ||||| || || || |||| ||||| || || ||| | Sbjct 241 GAAAGTCTGCTGGTGCTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATG 300 Query 71536 GACTA 71540 || || Sbjct 301 GATTA 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335463527171656