Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_018843.1
Length=103299
Score E
Sequences producing significant alignments: (Bits) Value
seq12851 165 5e-36
seq11667 143 2e-29
seq6113 98.7 7e-16
>seq12851
Length=316
Score = 165 bits (182), Expect = 5e-36
Identities = 178/236 (75%), Gaps = 0/236 (0%)
Strand=Plus/Plus
Query 68618 GGGCGTCTGCGTGCGCTGGGCAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTT 68677
|| ||| | || ||| |||| || ||| ||| ||||| || ||| || || |
Sbjct 76 GGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATACCGGTTGT 135
Query 68678 TTTCCATTCCTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGC 68737
|||| ||| ||||| |||||||| ||||| |||||||| ||||||||||| || |||
Sbjct 136 ATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCGGCGTGCGC 195
Query 68738 GGCGGCGCTGCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTG 68797
|||||||| || || ||||||||| || ||||| ||||| | |||||||||||||||
Sbjct 196 GGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTCTGCTGGTG 255
Query 68798 CTGAAAAACAACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGACTATGGCGT 68853
|| |||||||| || ||| | |||| ||||| || || ||| | || || |||||
Sbjct 256 CTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACGGCGT 311
>seq11667
Length=326
Score = 143 bits (158), Expect = 2e-29
Identities = 227/322 (70%), Gaps = 5/322 (2%)
Strand=Plus/Plus
Query 70372 TTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTCGACATT 70431
|| |||||||||||||| |||||| | ||||| |||||||| || ||||| || || |
Sbjct 9 TTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGGTAGATGTG 68
Query 70432 ACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGCGCCATATTTTCCTG 70491
| || |||||||| | || ||||| |||||||| ||||| || |
Sbjct 69 TCTCGCGATCGCATCGATT---ATCAGGCGCTGCCGGAGCACGAAAAACATATCTTTATT 125
Query 70492 AGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTAACGCAACA 70551
|| ||||| || ||||||||| ||||||| | ||||| ||||| || || | |
Sbjct 126 AGTAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATGTTGCG 185
Query 70552 CTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGTCGTTCTCC 70611
|| |||| ||||| || || || ||||| || || ||||| || |||||| |||| ||
Sbjct 186 CTATTGCCTCTGATTTCGATACCGGAGCTAGAAACCTGGGTGGAAACCTGGGCGTTTTCT 245
Query 70612 GAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATGA-CCCTAG 70670
|| || || || ||| |||||| || || |||||| ||| || | || || | |
Sbjct 246 GAAACCATACATTCGCGCTCCTATACCCATATCATCCGCAATATCGTCAACGATCCGTCG 305
Query 70671 CATCGTTTTCGACGGCATCGTC 70692
| | || ||||||| |||||||
Sbjct 306 C-TGGTGTTCGACGACATCGTC 326
>seq6113
Length=390
Score = 98.7 bits (108), Expect = 7e-16
Identities = 263/395 (67%), Gaps = 18/395 (5%)
Strand=Plus/Plus
Query 68867 CTGATGTATCGCCGCCTGGTGCGCAA---CGAAAACATTACGCTGTTCAGCCCACACGAT 68923
|||||||||| || ||| | ||| ||| | || ||| |||||||||| |||
Sbjct 5 CTGATGTATCAGCGTCTGAT---CAAGGGCGAGGATATCACGTTGTTCAGCCCCTCCGAC 61
Query 68924 GTGCCGGGCCTGTACGACGCGTTCTTTGTTGATCAGGACAAGTTCGAAGAGCTGTA--CC 68981
|||||||| || || ||||| ||||||| |||||||| | ||||| |||||| ||
Sbjct 62 GTGCCGGGGCTCTATGACGCCTTCTTTGCCGATCAGGATGAATTCGAGCGGCTGTATACC 121
Query 68982 TGAAGTACGAAGCCGACGAGAGCATCCGTAAGAAATC-TATCCCGGCCGTCGACCTGTTC 69040
| | | || ||| |||||||| | | || |||| ||| | || |||||
Sbjct 122 CTATATGAGCAG--GACAGCAGCATCCGACA-ACGTCGTATCAAGGCGTTGGAGTTGTTC 178
Query 69041 TCTACGCTGATGCAGGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCAC 69100
|| | ||||||||||||| || ||||| || || | ||| | ||||||| | ||
Sbjct 179 TCGCTGATGATGCAGGAGCGCGCTTCCACCGGCCGCATCTATGTGCACAACGTCAATCAT 238
Query 69101 ATGAACGATCACGGCGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGT 69160
||| ||| || ||||| | | || || ||| | | |||||| || || ||
Sbjct 239 TGCAACACCCACAGCCCATTCAACGCTGCGATGGCGCCGATTCGCCAGTCTAACCTGTGC 298
Query 69161 ATGGAGATCACGCTACCGACCAAGCCACT---GGCGTTCACTGACGATCCGAACGGGGAA 69217
|||| || | || || |||||||| | || ||| ||||| | ||| |||
Sbjct 299 CTGGAAATTGCACTGCCTACCAAGCCGTTGAAGGATGTCAACGACGA---CAGCGGTGAA 355
Query 69218 ATCGCGCTTTGCACCCTGTCTGCGTTCAACCTGGG 69252
|| || || ||||| ||||| || || || || ||
Sbjct 356 ATTGCCCTGTGCACTCTGTCAGCCTTTAATCTTGG 390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 330228355584480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |