Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_018843.1 Length=103299 Score E Sequences producing significant alignments: (Bits) Value seq12851 165 5e-36 seq11667 143 2e-29 seq6113 98.7 7e-16 >seq12851 Length=316 Score = 165 bits (182), Expect = 5e-36 Identities = 178/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68618 GGGCGTCTGCGTGCGCTGGGCAGTGAGATCCGCAATGGCGAGGCCACCCACACTGGCGTT 68677 || ||| | || ||| |||| || ||| ||| ||||| || ||| || || | Sbjct 76 GGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATACCGGTTGT 135 Query 68678 TTTCCATTCCTGAAACACTTCCAGACGGCGGTGAAATCCTGCTCTCAGGGCGGTGTTCGC 68737 |||| ||| ||||| |||||||| ||||| |||||||| ||||||||||| || ||| Sbjct 136 ATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCGGCGTGCGC 195 Query 68738 GGCGGCGCTGCTACAGCGTTCTATCCGATCTGGCACTTGGAAGTTGAAAGTCTGCTGGTG 68797 |||||||| || || ||||||||| || ||||| ||||| | ||||||||||||||| Sbjct 196 GGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTCTGCTGGTG 255 Query 68798 CTGAAAAACAACCGTGGCATTGAAGAGAACCGCGTTCGTCATCTCGACTATGGCGT 68853 || |||||||| || ||| | |||| ||||| || || ||| | || || ||||| Sbjct 256 CTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACGGCGT 311 >seq11667 Length=326 Score = 143 bits (158), Expect = 2e-29 Identities = 227/322 (70%), Gaps = 5/322 (2%) Strand=Plus/Plus Query 70372 TTCGAAAAGCTGATTGAAAAACAACTTTCGTTCTTCTGGCGCCCTGAAGAAGTCGACATT 70431 || |||||||||||||| |||||| | ||||| |||||||| || ||||| || || | Sbjct 9 TTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGGTAGATGTG 68 Query 70432 ACCACTGACCGCATCGACTTCAATACCAAGCTGCAAGAGCACGAGCGCCATATTTTCCTG 70491 | || |||||||| | || ||||| |||||||| ||||| || | Sbjct 69 TCTCGCGATCGCATCGATT---ATCAGGCGCTGCCGGAGCACGAAAAACATATCTTTATT 125 Query 70492 AGCAACCTGCGTTACCAGACGCTGTTGGATTCCGTTCAGGGTCGCAGTCCTAACGCAACA 70551 || ||||| || ||||||||| ||||||| | ||||| ||||| || || | | Sbjct 126 AGTAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATGTTGCG 185 Query 70552 CTGCTGCCGCTGATCTCCATTCCTGAGCTGGAGACATGGGTCGAGACCTGGTCGTTCTCC 70611 || |||| ||||| || || || ||||| || || ||||| || |||||| |||| || Sbjct 186 CTATTGCCTCTGATTTCGATACCGGAGCTAGAAACCTGGGTGGAAACCTGGGCGTTTTCT 245 Query 70612 GAGACGATTCACAGCCGCAGCTATACGCACATTATCCGCGGTATGGTGGATGA-CCCTAG 70670 || || || || ||| |||||| || || |||||| ||| || | || || | | Sbjct 246 GAAACCATACATTCGCGCTCCTATACCCATATCATCCGCAATATCGTCAACGATCCGTCG 305 Query 70671 CATCGTTTTCGACGGCATCGTC 70692 | | || ||||||| ||||||| Sbjct 306 C-TGGTGTTCGACGACATCGTC 326 >seq6113 Length=390 Score = 98.7 bits (108), Expect = 7e-16 Identities = 263/395 (67%), Gaps = 18/395 (5%) Strand=Plus/Plus Query 68867 CTGATGTATCGCCGCCTGGTGCGCAA---CGAAAACATTACGCTGTTCAGCCCACACGAT 68923 |||||||||| || ||| | ||| ||| | || ||| |||||||||| ||| Sbjct 5 CTGATGTATCAGCGTCTGAT---CAAGGGCGAGGATATCACGTTGTTCAGCCCCTCCGAC 61 Query 68924 GTGCCGGGCCTGTACGACGCGTTCTTTGTTGATCAGGACAAGTTCGAAGAGCTGTA--CC 68981 |||||||| || || ||||| ||||||| |||||||| | ||||| |||||| || Sbjct 62 GTGCCGGGGCTCTATGACGCCTTCTTTGCCGATCAGGATGAATTCGAGCGGCTGTATACC 121 Query 68982 TGAAGTACGAAGCCGACGAGAGCATCCGTAAGAAATC-TATCCCGGCCGTCGACCTGTTC 69040 | | | || ||| |||||||| | | || |||| ||| | || ||||| Sbjct 122 CTATATGAGCAG--GACAGCAGCATCCGACA-ACGTCGTATCAAGGCGTTGGAGTTGTTC 178 Query 69041 TCTACGCTGATGCAGGAGCGTGCCTCCACTGGTCGTGTTTATATTGCCAACGTCGACCAC 69100 || | ||||||||||||| || ||||| || || | ||| | ||||||| | || Sbjct 179 TCGCTGATGATGCAGGAGCGCGCTTCCACCGGCCGCATCTATGTGCACAACGTCAATCAT 238 Query 69101 ATGAACGATCACGGCGCATTCGTTCCGGAAATTGCACCGGTACACCAGTCCAATCTCTGT 69160 ||| ||| || ||||| | | || || ||| | | |||||| || || || Sbjct 239 TGCAACACCCACAGCCCATTCAACGCTGCGATGGCGCCGATTCGCCAGTCTAACCTGTGC 298 Query 69161 ATGGAGATCACGCTACCGACCAAGCCACT---GGCGTTCACTGACGATCCGAACGGGGAA 69217 |||| || | || || |||||||| | || ||| ||||| | ||| ||| Sbjct 299 CTGGAAATTGCACTGCCTACCAAGCCGTTGAAGGATGTCAACGACGA---CAGCGGTGAA 355 Query 69218 ATCGCGCTTTGCACCCTGTCTGCGTTCAACCTGGG 69252 || || || ||||| ||||| || || || || || Sbjct 356 ATTGCCCTGTGCACTCTGTCAGCCTTTAATCTTGG 390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330228355584480