Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq21718 120 2e-22 seq16708 116 3e-21 seq36416 91.5 1e-13 seq21758 82.4 6e-11 >seq21718 Length=958615 Score = 120 bits (132), Expect = 2e-22 Identities = 143/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 |||| ||||| || ||||| || || | || | || ||||| ||||| || ||||| | Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGA 51140 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 ||| ||||||||||| | || | ||||| ||||| ||||||| ||| ||| Sbjct 51141 TCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCT 51200 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || || || ||||| ||||| | ||||||||||| ||||||| ||||| || | Sbjct 51201 CGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGA 51260 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 51261 ATATCTGCATCGTG 51274 >seq16708 Length=1145218 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| |||||| ||| ||||| || ||||||||||||||| |||| | || || Sbjct 653833 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 653892 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || |||| ||||| ||||| | |||| ||||||||||| Sbjct 653893 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 653952 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || || || || |||| || || ||||| Sbjct 653953 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTC 654012 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||| ||||||||||| Sbjct 654013 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654041 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| |||||| ||| ||||| || ||||||||||||||| |||| | || || Sbjct 654517 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654576 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || |||| ||||| ||||| | |||| ||||||||||| Sbjct 654577 AACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654636 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || || || || |||| || || ||||| Sbjct 654637 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654696 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||| ||||||||||| Sbjct 654697 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654725 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || ||| || || || |||||||||||||| || | || | || ||| Sbjct 1010579 ACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCCTCC 1010638 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| || | ||| |||||||||| || | ||||| ||||| | Sbjct 1010639 AGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCCTGA 1010698 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || ||||| || |||| || || || || Sbjct 1010699 ATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTCTTC 1010758 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| |||||||||||||| Sbjct 1010759 CCAGTCAACGTTTTCACAAAAATCTGCAT 1010787 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || ||||| ||||||||||||||| |||| | || || Sbjct 654289 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654348 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || || || |||| ||||| ||||| | |||| |||||||| || Sbjct 654349 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654408 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| || | | | ||||| || || || |||| || || ||||| Sbjct 654409 ATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTC 654468 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||| ||||||||||| Sbjct 654469 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||| ||||| ||||||||||||||| |||| | || || Sbjct 654745 ACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654804 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || || || |||| ||||| ||||| | |||| |||||||| || Sbjct 654805 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654864 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| || | | | ||||| || || || |||| || || ||||| Sbjct 654865 ATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTC 654924 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||| ||||||||||| Sbjct 654925 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | |||| ||| || ||| || || || |||||||||||||| Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | || || || || || |||||||| ||||| |||| || Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| |||||| || ||| | | | || || ||||| ||| Sbjct 1010453 ATTCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAACC 1010512 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| || || ||||| || || |||||||||||||| Sbjct 1010513 TCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| |||||||| |||||||||||||| || | || | || || | || Sbjct 1010812 ATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCATCTTCGAGTTG 1010871 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || || || |||||||| ||||| |||| |||| || || ||||| |||||| Sbjct 1010872 TTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTT 1010931 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || || | | | || || ||||| ||||| | || ||||| || || || Sbjct 1010932 GGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGT 1010991 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || |||||||||||||| Sbjct 1010992 CAACGTCTTGACAAAAATCTGCAT 1011015 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| || ||||| ||||| || || | | | || | || ||| Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || |||| ||||| ||||| | |||| ||||||||||| Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | || || || || || |||| || || ||||| Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||| ||||||||||| Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | |||| ||| || || |||||| || || || ||||| || Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || ||| | || || | || || || || || |||| ||| ||||| |||| ||| Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || || ||| | | | || || ||||| ||| Sbjct 1010225 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACC 1010284 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || |||||||| || ||||| || ||||||||||||||||| Sbjct 1010285 TCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || | || | |||| ||| || ||| || || || |||||||||||||| Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | || || || || || |||| ||| ||||| |||| ||| Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| || || || | | | || || ||||| ||| Sbjct 1011137 ATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAACC 1011196 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || ||||| ||||| |||||||| || |||||||||||||| Sbjct 1011197 TCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| |||||| ||| ||||| || ||||||||||| ||| | || | || || Sbjct 654973 ACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAGAGAGTACGTCCATCCTCT 655032 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || || || |||| ||||| ||||| | |||| || ||||| || Sbjct 655033 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 655092 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| || | | | ||||| || || || |||| || || ||||| Sbjct 655093 ATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTC 655152 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCG-TGTGTACGTGT 48779 || || | ||| || ||||| |||||||| | ||| ||| ||| Sbjct 655153 CCTGTGAGAGTCTTGACAAAGATCTGCATGGTTGTATACCTGT 655195 >seq36416 Length=241146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 ||||||| || | || ||||||||||||| |||| ||| ||||| || || ||||| | Sbjct 80656 CGCCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGG 80597 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 | ||| ||| | || ||||| || || |||||||| ||||||| |||||||| | | Sbjct 80596 ACAGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTG 80537 Query 48658 GAA 48660 ||| Sbjct 80536 GAA 80534 >seq21758 Length=261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||| |||||| |||||||| || | ||| |||||||||| || | ||||| ||| Sbjct 253 TCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTG 194 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||| || || ||| | | | || || ||||| || |||| || || Sbjct 193 TCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATA 134 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| |||||||||||||| Sbjct 133 GTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380702829109464