Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_019398.1 Length=178193 Score E Sequences producing significant alignments: (Bits) Value seq12851 149 7e-31 seq16755 82.4 9e-11 >seq12851 Length=316 Score = 149 bits (164), Expect = 7e-31 Identities = 207/290 (71%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 40824 CGCGATCGTGAAGTATATCTCTCAACGTGCTGGTATTGGTGTCAACGCCGGACACATTCG 40883 |||||| || || ||| | || || || || || || || |||| ||||| | || || Sbjct 27 CGCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGCATCAATGCCGGCCGTATCCG 86 Query 40884 CGCTATGGGTTCAAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTTATCCCGTTCTG 40943 ||| |||| || || || || ||||| | ||||| || ||| ||||||| Sbjct 87 CGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATACCGGTTGTATTCCGTTCTA 146 Query 40944 GAAACACATTCAGACGGCGGTTAAATCCTGTTCCCAGGGCGGTGTTCGTGGTGGTGCAGC 41003 ||||| | ||||| ||||| ||||||||||| |||||||| || || || || || || Sbjct 147 TAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCGGCGTGCGCGGCGGCGCGGC 206 Query 41004 AACCCTGTATTATCCGATCTGGCATCTTGAAGTTGAAAACCTGTTGGTTCTGAAAAATAA 41063 || ||| ||||| || |||||| | || | |||| ||| |||| || ||||| || Sbjct 207 CACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTCTGCTGGTGCTAAAAAACAA 266 Query 41064 CCGTGGCGTTGAAGAAAACCGTATTCGTCACCTGGATTATGGCGTACAGC 41113 || ||||| |||| ||||| | || || ||||||| |||||||||| Sbjct 267 TCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACGGCGTACAGC 316 >seq16755 Length=287 Score = 82.4 bits (90), Expect = 9e-11 Identities = 67/80 (84%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 49480 GGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGTTCAAG 49539 || || |||||| | | ||||||||| | ||||||||||||| || ||||||||||| Sbjct 168 GGTCCCTTAGCTCAGT-GGTTAGAGCAAGCGACTCATAATCGCTTAGTCGCTGGTTCAAG 110 Query 49540 TCCAGCAGGGGCCACCAAAT 49559 ||||||||||||||||| || Sbjct 109 TCCAGCAGGGGCCACCATAT 90 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569729246363840