Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_019538.1 Length=231743 Score E Sequences producing significant alignments: (Bits) Value seq16755 100 4e-16 seq12851 87.8 3e-12 >seq16755 Length=287 Score = 100 bits (110), Expect = 4e-16 Identities = 72/82 (88%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 198933 TTGGCCCCTTAGCTCAGTTGGTTAGAGCAGCCGACTCATAATCGGTTGGTCACTGGTTCG 198992 |||| ||||||||||||| |||||||||| ||||||||||||| || ||| ||||||| Sbjct 170 TTGGTCCCTTAGCTCAGT-GGTTAGAGCAAGCGACTCATAATCGCTTAGTCGCTGGTTCA 112 Query 198993 AGTCCAGTAGGGGCCACCAGAT 199014 ||||||| ||||||||||| || Sbjct 111 AGTCCAGCAGGGGCCACCATAT 90 >seq12851 Length=316 Score = 87.8 bits (96), Expect = 3e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 119952 ACAAGCAGTTTCTCAACCTCCAAATGCCACATAGGGTAATTCAGAGTAGCAGAGCCGCCA 120011 || ||||| | || | |||||||||||||||||| || || || || | |||||| Sbjct 254 ACCAGCAGACTTTCGATCTCCAAATGCCACATAGGATAGAACAACGTGGCCGCGCCGCCG 195 Query 120012 CGTAGAGCACCTTGCGAACAGCTCTTAACCGCAGTATGGAAGTGCTTGTAGAATGGGATT 120071 || | | || || |||||| || ||||| || ||||| || || ||||| || || Sbjct 194 CGCACGCCGCCCTGAGAACAGGATTTGACCGCGGTCTGGAAATGTTTATAGAACGGAATA 135 Query 120072 ACGCCGGTATGGGTTGCTTCGCCGTTGCGAATTGGTGAACCCTCCGCACGAATAGCACCA 120131 ||||||||| ||||||||| |||||| || ||| ||| || ||| || Sbjct 134 CAACCGGTATGGAAAGCTTCGCCGCCGCGAATCGGGCTCCCCAACGCGCGGATACGGCCG 75 Query 120132 GCATTAATACCAATACCAGCACGTTG 120157 ||||| || || || || || || || Sbjct 74 GCATTGATGCCTATCCCGGCGCGCTG 49 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740980929707840