Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_019544.1 Length=49335 Score E Sequences producing significant alignments: (Bits) Value seq50200 116 1e-21 >seq50200 Length=540 Score = 116 bits (128), Expect = 1e-21 Identities = 235/349 (67%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 45884 TTTCAGTTTTACGTCGCGAATGGCCGGTTGTCATGCATGTGGCAACAGCGTTCTGTCGAT 45943 ||||||||||| || || || ||| ||||| || | | ||||| || |||| Sbjct 506 TTTCAGTTTTATGTTGCCAACGGCACCTTGTCCTGTCAGCTCTATCAGCGCTCATGCGAT 447 Query 45944 ACATTTCTAGGATTGCCGTTTAACATCGCTAGCTATGCGCTGTTGACACATATGGTTGCC 46003 | || || || |||||||||| ||||| |||||||| || || ||||||| | || Sbjct 446 ATTTTCCTCGGCCTGCCGTTTAATATCGCCAGCTATGCCTTGCTGGTACATATGCTGGCG 387 Query 46004 CAACAATGCGACCTCGATGTCGGCGAACTCATTTTCACCGGCGGCGACGTCCATTTGTAC 46063 || || ||||| | | ||| | || || | | ||||| ||||| |||| | ||| Sbjct 386 CAGCAGTGCGATTTGCAGGTCTGTGATTTCGTCTGGACCGGAGGCGATACCCATCTCTAC 327 Query 46064 AAAAATCATCTGGAACAAGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGCCGAAG 46123 | || ||| || | || ||| | |||||||| || || || || | ||||||||| || Sbjct 326 AGTAACCATTTGCAGCAGGCGGACCTGCAGCTAACCCGTGATCCTCTGCCGCTGCCGCAG 267 Query 46124 CTCGTGATCAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGAGGATTTTGAATTT 46183 || |||| || || ||| || | | | ||||| | ||||||||||| | Sbjct 266 CTGCTGATTAAGCGCCGTCCGGCGACATTGCTCGACTACCGTTTTGAGGATTTTGAGCTG 207 Query 46184 GTCGGCTATGACCCGCACCCGGCGATTAAGGCTCCTGTATCCGTTTGAG 46232 ||||| || || ||||| || || || || || || | |||| || Sbjct 206 ACGGGCTACGATCCCCACCCAGCAATCAAAGCACCGGTGGCAGTTTAAG 158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157655671673552