Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq50200 141 1e-28 >seq50200 Length=540 Score = 141 bits (156), Expect = 1e-28 Identities = 222/315 (70%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 123071 TTGTCCTGTCAGCTGTATCAGCGCAG-TGCTGACATGTTCCTAGGCGTACCGTTTAACAT 123129 |||||||||||||| ||||||||| ||| || || ||||| ||| | |||||||| || Sbjct 479 TTGTCCTGTCAGCTCTATCAGCGCTCATGC-GATATTTTCCTCGGCCTGCCGTTTAATAT 421 Query 123130 TGCCTCTTACGCGCTCCTGATACACATGTTTGCCCAGCAGGCCAATATGGCAGTAGGTGA 123189 ||| || || | ||| |||| ||| | || |||||| | || || || |||| Sbjct 420 CGCCAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAGTGCGATTTGCAGGTCTGTGA 361 Query 123190 CTTCGTGTGGACGGGTGGGGATGTGCATCTGTACTCCAACCACCTGGAGCAGGCAGATTT 123249 ||||| ||||| || || ||| ||||| ||| ||||| || ||||||| || | Sbjct 360 TTTCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCT 301 Query 123250 GCAGTTAACTCGCGAACCTCATCCGTTACCACAACTGCGGATTAAACGTCGTCCGGATTC 123309 |||| |||| || || |||| ||| | || || |||| |||||| || ||||||| | Sbjct 300 GCAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCGCCGTCCGGCGAC 241 Query 123310 TATCTTCGACTATAAGTTTGAAGATTTCGAAGTGGTCGGATACGAATCGCATGACGCTAT 123369 | ||||||| ||||| ||||| || || || ||||| | || || || Sbjct 240 ATTGCTCGACTACCGTTTTGAGGATTTTGAGCTGACGGGCTACGATCCCCACCCAGCAAT 181 Query 123370 TAAGGCACCGGTGGC 123384 || ||||||||||| Sbjct 180 CAAAGCACCGGTGGC 166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777140458812800