Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_020080.1 Length=174413 Score E Sequences producing significant alignments: (Bits) Value seq12851 143 3e-29 >seq12851 Length=316 Score = 143 bits (158), Expect = 3e-29 Identities = 218/309 (71%), Gaps = 6/309 (2%) Strand=Plus/Plus Query 40548 TTAACGCTGTAACCTCT---GCGATCGTGAAGTATATTTCACAACGTGCTGGTATTGGGG 40604 |||||||| ||||| ||||| || || ||| | || || || || || || || Sbjct 11 TTAACGCT---ACCTCCAGCGCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGCA 67 Query 40605 TTAACGCGGGACATATTCGCGCAATGGGTTCTAAAATCCGTGGTGGTGAAGCTGTTCATA 40664 | || || || | ||| ||||| |||| || || || || |||||| | |||| Sbjct 68 TCAATGCCGGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATA 127 Query 40665 CTGGTGTGATTCCTTTCTGGAAACATATTCAAACCGCTGTTAAATCCTGTTCACAGGGTG 40724 | ||| ||||| |||| |||||| | || ||||| || ||||||||||| ||||| | Sbjct 128 CCGGTTGTATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCG 187 Query 40725 GCGTTCGTGGTGGTGCTGCAACACTGTATTATCCTTTCTGGCATCTGGAAGTTGAAAACC 40784 |||| || || || || || || ||| |||||| | |||||| |||| | |||| | Sbjct 188 GCGTGCGCGGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTC 247 Query 40785 TTCTGGTGTTGAAGAACAACAAAGGCGTAGAAGAAAACCGCGTTCGTCATCTTGATTATG 40844 | |||||| | || ||||| ||||| |||| ||||| || || ||| | ||||| | Sbjct 248 TGCTGGTGCTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACG 307 Query 40845 GTGTACAGC 40853 | ||||||| Sbjct 308 GCGTACAGC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557640892245440