Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_020201.1 Length=142349 Score E Sequences producing significant alignments: (Bits) Value seq11667 109 5e-19 >seq11667 Length=326 Score = 109 bits (120), Expect = 5e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 76461 AACGCCCAAGTCTCTACCCATGTTTCCAGGGT-GGTGTCGGATACGATCGGCAGAAGAAC 76519 |||||||| || || ||||| ||||| || ||| ||| | | | |||| || | Sbjct 241 AACGCCCAGGTTTCCACCCAGGTTTCTAGCTCCGGTATCGAAATC-AGAGGCAATAGCGC 183 Query 76520 TGCGTTCGGCCCACGGCCCTGTACAGAATCCAGGAGGATCTGGTACTTCAGGTTGCTGAT 76579 | || || | |||||||| | |||||||| || |||| || || ||||| || || Sbjct 182 AACATTGGGGCTGCGGCCCTGGATTGAATCCAGCAGCGTCTGATATTTGAGGTTACTAAT 123 Query 76580 GAAGATGTGCTTCTCGTGATCCGGCAGGTTCATGTAGTCGATTCGGTCACGGGTCACGTT 76639 ||||| || || ||||| |||||||| | || ||||| || || || | ||| | Sbjct 122 AAAGATATGTTTTTCGTGCTCCGGCAGCGCCTGATAATCGATGCGATCGCGAGACACATC 63 Query 76640 AACTTCTTCAGGTCGCCAGAAGAACGCCAGTTGCTTTTCAATCAGCTTCTCGAA 76693 || ||||| || |||||||| |||| || ||| || ||||||||||| || || Sbjct 62 TACCTCTTCCGGACGCCAGAAAAACGACAATTGTTTCTCAATCAGCTTTTCAAA 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455100948739520