Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 96.9 2e-15
>seq10733
Length=171697
Score = 96.9 bits (106), Expect = 2e-15
Identities = 202/301 (67%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058
||||||||| ||||||||||| || |||||||||| ||||||||||||||||| | |||
Sbjct 126642 ATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAATACAAAGC 126701
Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118
||| ||| ||| || ||| |||||||| || |||| || || | || | ||
Sbjct 126702 AAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTGTTATATAC 126761
Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGT 26178
| | ||| ||||| || ||| | || | || |||||| || | || |
Sbjct 126762 TCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGTGTACCCCT 126821
Query 26179 CGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238
| ||| ||| || ||| | || || |||||||| |||| ||| ||||||
Sbjct 126822 AGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTACTAATGAGTGCACA 126881
Query 26239 ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298
| | |||||| |||| |||| || ||||| | ||||| ||| | ||||||
Sbjct 126882 TCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGTTAACAGAAAACA 126941
Query 26299 A 26299
|
Sbjct 126942 A 126942
Score = 84.2 bits (92), Expect = 1e-11
Identities = 121/167 (72%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGT-TTGAAGTGA-ATGGTTCAAAACAT 25072
||| ||||| ||||| ||||||||| | |||| | ||| | | ||||||| | | ||
Sbjct 125710 AAACTCTCCTGACAAGACTCTTCTTGT--ATAAATATTGTTGGTATATGGTTCTATAGAT 125767
Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132
||||||||||||| ||| || | ||||| ||||||||||| || |||| | |||
Sbjct 125768 TCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATTAGCAAAGAA 125827
Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179
|| || | || | |||| | |||| || ||| ||| |||||||
Sbjct 125828 TTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATC 125874
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 252884052080600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |