Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq10733 96.9 2e-15 >seq10733 Length=171697 Score = 96.9 bits (106), Expect = 2e-15 Identities = 202/301 (67%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 25999 ATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC 26058 ||||||||| ||||||||||| || |||||||||| ||||||||||||||||| | ||| Sbjct 126642 ATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAATACAAAGC 126701 Query 26059 AAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAAC 26118 ||| ||| ||| || ||| |||||||| || |||| || || | || | || Sbjct 126702 AAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTGTTATATAC 126761 Query 26119 TTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGT 26178 | | ||| ||||| || ||| | || | || |||||| || | || | Sbjct 126762 TCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGTGTACCCCT 126821 Query 26179 CGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA 26238 | ||| ||| || ||| | || || |||||||| |||| ||| |||||| Sbjct 126822 AGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTACTAATGAGTGCACA 126881 Query 26239 ATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACA 26298 | | |||||| |||| |||| || ||||| | ||||| ||| | |||||| Sbjct 126882 TCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTGTTAACAGAAAACA 126941 Query 26299 A 26299 | Sbjct 126942 A 126942 Score = 84.2 bits (92), Expect = 1e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 25015 AAATTCTCCAGACAAAACTCTTCTTATTGATAAGT-TTGAAGTGA-ATGGTTCAAAACAT 25072 ||| ||||| ||||| ||||||||| | |||| | ||| | | ||||||| | | || Sbjct 125710 AAACTCTCCTGACAAGACTCTTCTTGT--ATAAATATTGTTGGTATATGGTTCTATAGAT 125767 Query 25073 TCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATGCTATTAATAGCGAA 25132 ||||||||||||| ||| || | ||||| ||||||||||| || |||| | ||| Sbjct 125768 TCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGGCGCAATTAGCAAAGAA 125827 Query 25133 TTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAATC 25179 || || | || | |||| | |||| || ||| ||| ||||||| Sbjct 125828 TTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCCCAATC 125874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252884052080600