Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq18886 84.2 3e-11 >seq18886 Length=112513 Score = 84.2 bits (92), Expect = 3e-11 Identities = 162/239 (68%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || || |||||||| | ||||| |||||||| ||||| || |||||||| || |||||| Sbjct 87539 ACTCCTATAGGACCCATCCCAGGTCCTCCACCGCCATGAGGTATACAGAAAGTTTTATGT 87480 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | ||| | || || || || || | || || || || |||||| Sbjct 87479 AAATTCAAATGCGAAACGTCGCTGCCGTAATCGCCAGGACGGCAAAGGCCAACTTGTGCA 87420 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | || || ||||| | |||||| || || || ||| ||||| ||| ||||| Sbjct 87419 TTCATGTTAGCTCCATCTAAATATACTTGGCCCCCCGCGTCGTGAACCATCGCGCATATG 87360 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACATGA 138421 | | || || || || || || | ||||| || || || ||||| | ||| || Sbjct 87359 TCGCCTATCGTTTCCTCGAAAACGCCGTTCGTCGACGGGTACGTTATCATTAAACAAGA 87301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578632415111360