Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021073.1 Length=107218 Score E Sequences producing significant alignments: (Bits) Value seq12851 159 2e-34 seq11667 145 5e-30 >seq12851 Length=316 Score = 159 bits (176), Expect = 2e-34 Identities = 220/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 9338 TCAATCAATGCAACATCAGGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGC 9397 || || || || || || |||| || || | || || || ||||| || || || ||| Sbjct 7 TCCATTAACGCTACCTCCAGCGCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGC 66 Query 9398 ATTAACGCGGGTCGTATCCGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACAT 9457 || || || || |||||||| || || || |||||| || || ||||| | ||| Sbjct 67 ATCAATGCCGGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCAT 126 Query 9458 ACTGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGC 9517 || |||||||| || ||||| ||||| ||||| || || || |||| ||| || ||| Sbjct 127 ACCGGTTGTATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGC 186 Query 9518 GGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTGGCACCTAGAGTACAAATCA 9577 || || || ||||||||||| ||| | ||||| || |||||||| | ||| | || Sbjct 187 GGCGTGCGCGGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGT 246 Query 9578 CTAATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTAC 9637 || | || || || ||||| || || | |||| ||||| || || |||||||| ||| Sbjct 247 CTGCTGGTGCTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTAC 306 Query 9638 GGTGTACA 9645 || ||||| Sbjct 307 GGCGTACA 314 >seq11667 Length=326 Score = 145 bits (160), Expect = 5e-30 Identities = 221/312 (71%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 11021 TTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGAAGTTGATGTG 11080 ||||| || || | | |||| ||| | || || ||||||||||| ||||| || |||||| Sbjct 9 TTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGGTAGATGTG 68 Query 11081 TCACAAGACCGAATCGACTA-CAGTAAAATGACTGATGCGGAGAAACACATCTTCATTAG 11139 || | || || ||||| || ||| || | || || ||||| ||||| ||||| Sbjct 69 TCTCGCGATCGCATCGATTATCAGGCGC-TGCCGGAGCACGAAAAACATATCTTTATTAG 127 Query 11140 TAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAATATGGCGTT 11199 |||||| || || || || | || || || ||||| ||||| ||||| ||| | ||| | Sbjct 128 TAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATGTTGCGCT 187 Query 11200 CCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAGCTTCAGCGA 11259 ||||| | | || |||| || | ||||| ||||| ||||| ||| || || Sbjct 188 ATTGCCTCTGATTTCGATACCGGAGCTAGAAACCTGGGTGGAAACCTGGGCGTTTTCTGA 247 Query 11260 AACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGACCCTAGTAT 11319 |||||| || || || || || || || ||||| |||||||| ||||| || || | Sbjct 248 AACCATACATTCGCGCTCCTATACCCATATCATCCGCAATATCGTCAACGATCCGTCGCT 307 Query 11320 TGTGTTCGATGA 11331 |||||||| || Sbjct 308 GGTGTTCGACGA 319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 342761426720792