Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_021073.1
Length=107218
Score E
Sequences producing significant alignments: (Bits) Value
seq12851 159 2e-34
seq11667 145 5e-30
>seq12851
Length=316
Score = 159 bits (176), Expect = 2e-34
Identities = 220/308 (71%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 9338 TCAATCAATGCAACATCAGGCGCAATCGTGAGTTACGTTTCACAGCGTGCAGGTATTGGC 9397
|| || || || || || |||| || || | || || || ||||| || || || |||
Sbjct 7 TCCATTAACGCTACCTCCAGCGCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGC 66
Query 9398 ATTAACGCGGGTCGTATCCGAGCATTAGGTTCTGAGATTCGTGGTGGTGAAGCGGTACAT 9457
|| || || || |||||||| || || || |||||| || || ||||| | |||
Sbjct 67 ATCAATGCCGGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCAT 126
Query 9458 ACTGGTTGTATCCCATTCTACAAACACTTCCAAACAGCAGTGAAATGTTGTAGCCAAGGC 9517
|| |||||||| || ||||| ||||| ||||| || || || |||| ||| || |||
Sbjct 127 ACCGGTTGTATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGC 186
Query 9518 GGTGTTCGTGGCGGCGCGGCAACGGTATTCTACCCAATGTGGCACCTAGAGTACAAATCA 9577
|| || || ||||||||||| ||| | ||||| || |||||||| | ||| | ||
Sbjct 187 GGCGTGCGCGGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGT 246
Query 9578 CTAATCGTACTCAAGAACAACCGTGGTATCGAAGAAAACCGTGTACGTCATATGGACTAC 9637
|| | || || || ||||| || || | |||| ||||| || || |||||||| |||
Sbjct 247 CTGCTGGTGCTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTAC 306
Query 9638 GGTGTACA 9645
|| |||||
Sbjct 307 GGCGTACA 314
>seq11667
Length=326
Score = 145 bits (160), Expect = 5e-30
Identities = 221/312 (71%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 11021 TTTGAGAAACTAACTCAGAAGCAACTATCATTCTTCTGGCGTCCCGAAGAAGTTGATGTG 11080
||||| || || | | |||| ||| | || || ||||||||||| ||||| || ||||||
Sbjct 9 TTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGGTAGATGTG 68
Query 11081 TCACAAGACCGAATCGACTA-CAGTAAAATGACTGATGCGGAGAAACACATCTTCATTAG 11139
|| | || || ||||| || ||| || | || || ||||| ||||| |||||
Sbjct 69 TCTCGCGATCGCATCGATTATCAGGCGC-TGCCGGAGCACGAAAAACATATCTTTATTAG 127
Query 11140 TAACCTGAAGTACCAAACATTACTCGACTCGATCCAAGGCCGTAGCCCGAATATGGCGTT 11199
|||||| || || || || | || || || ||||| ||||| ||||| ||| | ||| |
Sbjct 128 TAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATGTTGCGCT 187
Query 11200 CCTGCCTATTGTGTCACTACCAGAAGTCGAAACTTGGGTAGAAACGTGGAGCTTCAGCGA 11259
||||| | | || |||| || | ||||| ||||| ||||| ||| || ||
Sbjct 188 ATTGCCTCTGATTTCGATACCGGAGCTAGAAACCTGGGTGGAAACCTGGGCGTTTTCTGA 247
Query 11260 AACCATCCACTCTCGTTCATACACACACATCATTCGCAATATTGTCAATGACCCTAGTAT 11319
|||||| || || || || || || || ||||| |||||||| ||||| || || |
Sbjct 248 AACCATACATTCGCGCTCCTATACCCATATCATCCGCAATATCGTCAACGATCCGTCGCT 307
Query 11320 TGTGTTCGATGA 11331
|||||||| ||
Sbjct 308 GGTGTTCGACGA 319
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 342761426720792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |