Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq16708 159 6e-34 seq21758 122 2e-22 seq901 91.5 3e-13 seq36416 84.2 4e-11 >seq16708 Length=1145218 Score = 159 bits (176), Expect = 6e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||| ||| || |||||||| | || | |||||| || ||||| ||| Sbjct 1010102 ATTCCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCG 1010161 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | |||||| ||| || | ||||||||| || || || |||| ||||| || ||| Sbjct 1010162 GAAAGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGA 1010221 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||||| || | ||| || || ||||||| |||| Sbjct 1010222 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCA 1010281 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| ||||| ||||| | ||| |||||||| || |||||| Sbjct 1010282 ACCTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATT 1010332 Score = 141 bits (156), Expect = 2e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||||||| || |||||||| | || | || || ||||| || || Sbjct 1010558 ATTCCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCA 1010617 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || ||||||||||| ||||||| |||||||| ||| Sbjct 1010618 GAGAGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGA 1010677 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 |||||||| ||||| || || ||||||| || | ||| ||| ||||| |||| ||| Sbjct 1010678 GGTATTCCCTCTTTGTCCTGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCG 1010737 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| | || ||||| || || || | |||||| ||||| || |||||| Sbjct 1010738 ACTTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCATT 1010788 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||| | || ||||| ||||||| || | ||||| ||||| || || Sbjct 1010786 ATTCCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCA 1010845 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||||||| || || || | || ||||| || ||| Sbjct 1010846 GAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGA 1010905 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| ||||| || |||| || | ||| ||| |||||||||| |||| Sbjct 1010906 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCA 1010965 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || || ||||| | ||| || ||||| || |||||| Sbjct 1010966 ACCTCGAGGGTTATCGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCATT 1011016 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||| ||| || |||||||| | || | || || ||||| || || Sbjct 1011242 ATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCA 1011301 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||||||| || || || |||| ||||| || ||| Sbjct 1011302 GAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGA 1011361 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||||| || | || ||| |||||||||| |||| Sbjct 1011362 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCA 1011421 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| || || ||||||| ||| || || || || ||||| Sbjct 1011422 ACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| ||| || ||| || || || |||| |||| ||| Sbjct 654286 AGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCC 654345 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| ||| || || || || || || | ||| ||||||||||| ||||| || ||||| Sbjct 654346 TCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCC 654405 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||||| ||| | ||| || ||||| |||| || ||||| || || |||||| Sbjct 654406 TGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTT 654465 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || ||||| || || |||||| Sbjct 654466 TTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654498 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| ||||| ||| || || || |||| |||| ||| Sbjct 654742 AGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCC 654801 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 |||| ||| || || || || || || | ||| ||||||||||| ||||| || ||||| Sbjct 654802 TCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCC 654861 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||||| ||| | ||| || ||||| |||| || ||||| || || |||||| Sbjct 654862 TGGATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTT 654921 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || ||||| || || |||||| Sbjct 654922 TTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654954 Score = 123 bits (136), Expect = 4e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||||||| || |||||||| | || | || || ||||| || || Sbjct 1011014 ATTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCA 1011073 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||||||| || || || |||| ||||| || ||| Sbjct 1011074 GAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGA 1011133 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||||| || | || ||| |||||||||| |||| Sbjct 1011134 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCA 1011193 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || || || || | || || ||||| || |||||| Sbjct 1011194 ACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATT 1011244 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||| ||| || |||||||| | || | || || ||||| || || Sbjct 1010330 ATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCA 1010389 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | ||||||||| || || || | || ||||| || ||| Sbjct 1010390 GAGAGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGA 1010449 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 |||||||| ||||| || || || |||| || | ||| || |||||||||| |||| Sbjct 1010450 GGTATTCCCTCTTTGTCCTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCA 1010509 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || || ||||| | || || ||||| || |||||| Sbjct 1010510 ACCTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCATT 1010560 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| |||| | || || || ||||| | || | ||| || || ||||| || | Sbjct 1009875 TACCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAG 1009934 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | | || | ||| ||||| || ||||| || || || ||||| || || || || | Sbjct 1009935 AAAGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTG 1009994 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | ||||||||||| ||||| ||||| | ||| | |||| || |||||||| | ||| | Sbjct 1009995 GAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGCCTCGA 1010054 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| | || ||||| || || || || || || ||||| || |||||| Sbjct 1010055 CTTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCATT 1010104 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| ||| || || || || || || | ||| ||||||||||| |||||||| || Sbjct 655026 ATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCTTCCTT 655085 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || ||||||| ||| | ||| || || || |||| || ||||| || || || Sbjct 655086 ATCCTGGATTTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCGACTTCCAGGGTGAT 655145 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || || || ||||| || ||||| Sbjct 655146 GGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 100 bits (110), Expect = 5e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||| ||| | |||| ||| || ||| || ||||| || || || | ||| Sbjct 654058 AGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCC 654117 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 || | || || || || ||||| || | ||| ||||||||||| ||||| || || || Sbjct 654118 TCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCC 654177 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||||| ||| | ||| || || || || | || ||||| || || || ||| Sbjct 654178 TGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTT 654237 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || ||||| || || |||||| Sbjct 654238 TTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654270 Score = 100 bits (110), Expect = 5e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 193149 AGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCG 193208 || |||||||| | || | ||| || || || || || |||| |||| ||| Sbjct 654514 AGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCATCC 654573 Query 193209 TCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCT 193268 ||||| || || || || || || || | ||| ||||||||||| ||||| || || || Sbjct 654574 TCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCC 654633 Query 193269 TGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTT 193328 || ||||||| ||| | ||| || || || || | || ||||| || || || ||| Sbjct 654634 TGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTT 654693 Query 193329 TTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || ||||| || || |||||| Sbjct 654694 TTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654726 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| |||| | || || |||||||| | || | ||| || || || || || || Sbjct 653814 ACCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGA 653873 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 || |||| ||| ||||| || || || || || || || | ||| ||||||||||| Sbjct 653874 TAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGG 653933 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 ||||| || || || || ||||||| ||| | ||| || || || || | || || Sbjct 653934 AATTCCCTCCTTGTCCTGGATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 653993 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||| | || || ||||| ||||| || || ||||| || || |||||| Sbjct 653994 TTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATT 654042 >seq21758 Length=261 Score = 122 bits (134), Expect = 2e-22 Identities = 115/147 (78%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||||||||| ||||||| |||||||| ||||||||||| ||||| || || ||| Sbjct 244 TGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCCTGAATT 185 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| ||||| |||| ||| ||||| | || ||||| || || Sbjct 184 TTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTCTTCCCA 125 Query 193335 GTTAGCGTTTTTACAAATATTTGCATT 193361 || | |||||| ||||| || |||||| Sbjct 124 GTCAACGTTTTCACAAAAATCTGCATT 98 >seq901 Length=499 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 ||| ||||||||||| |||||||| ||||| || ||||||| ||| | ||| || || Sbjct 8 CTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCTTTCACGTTTTCGATCGT 67 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 || |||| || ||||| || || || ||||| ||||| || || || ||||| || || Sbjct 68 GTCTGAAGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTG 127 Query 193358 CAT 193360 ||| Sbjct 128 CAT 130 >seq36416 Length=241146 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || |||||||| || | |||| ||| || || | ||| || || ||||| ||||| Sbjct 80654 CCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGGAC 80595 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| || |||||||| ||||||||||| | ||| |||||||| || || Sbjct 80594 AGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTGGA 80535 Query 193254 ATTCCT 193259 |||||| Sbjct 80534 ATTCCT 80529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899085728453760