Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq16708 127 3e-24 seq48246 86.0 9e-12 >seq16708 Length=1145218 Score = 127 bits (140), Expect = 3e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| || ||||||| || ||||| ||||| |||||||| | || Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || ||| |||||| |||||| ||||| |||||||| || || || || || Sbjct 1010044 CGATACCATCGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCGGACCA 1009985 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||| | || || |||||| | |||||| | || | || |||||||| Sbjct 1009984 GCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATAA 1009925 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 1009924 CATCCAGAAGGAGTCGACCCTTCAT 1009900 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || ||||||||||| || || || | || || || | ||| Sbjct 1011244 AATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTC 1011185 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| ||| ||||| || ||||| || || |||||||| || ||||| || || Sbjct 1011184 CGATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1011125 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| ||||||| | || || || || ||||||||| | || | || ||||| || Sbjct 1011124 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1011065 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||| || || | || |||||| | || || |||| |||||||| Sbjct 1011064 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGG 1011017 >seq48246 Length=3565318 Score = 86.0 bits (94), Expect = 9e-12 Identities = 130/184 (71%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 |||| |||| || | || || ||||| ||||| || || |||||||| || || | | Sbjct 2532197 TTTCATTGGCGTCCGTGATGTATGTGTCAATTAATAAGGAGTACATTTCTGAGTGCACGT 2532256 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTC---GC 18527 | ||||| |||| ||||| | ||| || | | ||||| | ||||| || || Sbjct 2532257 TCTCCATCGCTACTTGAAAGCCATAGAAACAGCGTGCCTCTGTCACTTGAACTTCTTGGC 2532316 Query 18528 TATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCA 18587 || |||| |||||| | |||||||||||| |||||||| | | ||||| ||||| | Sbjct 2532317 TA---AATCGTTCTACGAGATTCTCATTAACGATACCGTCGGATGCCGCGAAGAATGCTA 2532373 Query 18588 AAAC 18591 | || Sbjct 2532374 ATAC 2532377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731409383708800