Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21718 123 5e-23 seq16708 109 1e-18 seq36416 84.2 4e-11 >seq21718 Length=958615 Score = 123 bits (136), Expect = 5e-23 Identities = 137/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| |||||||| || | | ||| | || |||||||| || |||||||| || || | Sbjct 51088 AATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGATCAAACG 51147 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| || ||||| ||||| ||||| ||||| || || ||| ||||| ||||| Sbjct 51148 CTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCTCGATAGT 51207 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || | ||||| || || ||||| |||||||| || | ||||| | ||||||||| Sbjct 51208 GTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGAATATCTG 51267 Query 172067 CAT 172069 ||| Sbjct 51268 CAT 51270 >seq16708 Length=1145218 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || |||||||| || | | ||| | || || || || || ||||| || || ||||| Sbjct 1009922 ATGTTATAATCAGAAAGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTT 1009981 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| ||||||||||| ||||| |||||| ||| ||||| || ||| Sbjct 1009982 TGCTGGTCCGGTGGAATTCCTTCTTTGTCTTGAATTTTAGCTTTCACATTTTCGATGGTA 1010041 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || |||| || ||||| | || || || || ||||| | || |||| || |||||| Sbjct 1010042 TCGGACGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGC 1010101 Query 172068 ATT 172070 ||| Sbjct 1010102 ATT 1010104 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| ||||||| || | ||| | || | |||||| || |||||||| Sbjct 1010102 ATTCCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCG 1010161 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | |||||| ||||| || || |||| |||||||| || Sbjct 1010162 GAAAGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGA 1010221 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || ||||| || || || || | || Sbjct 1010222 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCA 1010281 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || ||||| || || || || || | || ||||||||| Sbjct 1010282 ACCTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCATT 1010332 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| ||||||| || | ||| | ||| | || || ||||| ||||| Sbjct 1011242 ATTCCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCA 1011301 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||| ||||| || || |||| |||||||| || Sbjct 1011302 GAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGA 1011361 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || || || || ||||| || | || Sbjct 1011362 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCA 1011421 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || || ||||| || || | ||| |||||||| Sbjct 1011422 ACCTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCAT 1011471 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||| ||| || | ||| | ||| | ||| | ||||| ||||| ||||| Sbjct 1010786 ATTCCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCA 1010845 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||| ||||| || || | || |||||||| || Sbjct 1010846 GAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGA 1010905 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || || || || || ||||| || | || Sbjct 1010906 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCA 1010965 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || || || || || || || | || ||||||||| Sbjct 1010966 ACCTCGAGGGTTATCGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCATT 1011016 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || ||||| | ||||| || | ||| | ||| | || || ||||| ||||| Sbjct 1011014 ATTCCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCA 1011073 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | ||| | || || | |||||| ||||| || || |||| |||||||| || Sbjct 1011074 GAGAGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGA 1011133 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || || || || ||||| || | || Sbjct 1011134 GGAATTCCTTCTTTGTCCTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCA 1011193 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || || || || || || ||||| || || || | || ||||||||| Sbjct 1011194 ACCTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCATT 1011244 >seq36416 Length=241146 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | ||||| || |||||||| || | ||| || || |||||||| || Sbjct 80654 CCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGGAC 80595 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 | || || | || ||||||||||| || |||||||| | ||| ||||| || ||||| Sbjct 80594 AGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTGGA 80535 Query 171963 ATTCCT 171968 |||||| Sbjct 80534 ATTCCT 80529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904563863534400