Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq45834 104 7e-17 seq46024 87.8 5e-12 seq48246 86.0 2e-11 seq49508 84.2 6e-11 >seq45834 Length=1467924 Score = 104 bits (114), Expect = 7e-17 Identities = 188/272 (69%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 ||||| ||| || | ||||| ||||| ||||| ||| | ||||| ||||| ||| Sbjct 1357809 TCCATGGCCTTTATCAGCCGACGTTGAATGTAACCGGTTTCCGCGGTTTTCACAGCGGTA 1357750 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| | || || |||||||| ||||| | | || ||| || || Sbjct 1357749 TCGATGAGACCCTCGCGGCCTCCCATAGCGTGGAAATAAAATTCCGACGGGGTCAGACCG 1357690 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 | | | ||| |||| ||||| || | || |||||| || ||||||| ||| | Sbjct 1357689 GCGAGGTAAGAGTTCTCGACGAATCCTCTCGACTCGGGACCGTAATCGTCT---TTGATG 1357633 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || ||||| || || || | | ||| | |||||||| || || || ||||||||| Sbjct 1357632 AAATGCGGCAGCGTTCTCTTGCGAAAACCGAACGGGATACGTTTACCTTCCACGTTCTGC 1357573 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| ||| | |||| ||| || ||||| Sbjct 1357572 TGACCCACGCAGGCGATCACCTGAGAGATATT 1357541 >seq46024 Length=614665 Score = 87.8 bits (96), Expect = 5e-12 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| |||||||| |||||||||||||| ||||| || | || || | Sbjct 164181 CGATGGTCATACGAGACGGAATAGCGTGGGGATTGATGATTATGTCTGGCGTGAGACCCT 164240 Query 251903 CAGCA-GTGAAGGGCATATCCTTTTCCTCAATAATGT-TTCCAATAGTTCCCTTTTGTCC 251960 | ||| | ||| ||||| |||| || | | || ||| | || || |||||||| || Sbjct 164241 C-GCACGAGAACGGCATGTCCTCTTGC-CTGTATTGTATACCGCACGTACCCTTTTGCCC 164298 Query 251961 GTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTT 252020 ||| || ||| ||| || ||||| || || ||||| || || | |||| || Sbjct 164299 GTGCCGCGAAGCGAATTTGTCACCGATCTGCGGTATACGAACGCTGCGCACTCGAATTTT 164358 Query 252021 ACAGAAGTTGTAACCATCACCGTT 252044 ||| || ||||| || || | ||| Sbjct 164359 ACAAAACTTGTACCCTTCGCTGTT 164382 >seq48246 Length=3565318 Score = 86.0 bits (94), Expect = 2e-11 Identities = 160/226 (71%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 133416 TATTCAACGCCATTAGCGAATTT-CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAA 133474 |||||||||| ||| | |||| | |||||| | ||||| | ||||||| |||||| Sbjct 2532118 TATTCAACGCGATT-GAGAATCTGCCTTGTGTCGCCAAGAAGGCCAACTGGGC-ATTAAA 2532061 Query 133475 T-GGAT---CCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGT 133530 | |||| ||| || | |||| | ||| | || | || || ||||| | || Sbjct 2532060 TTGGATAAACCATGAAA---GTGCCACTTTCCCCGAGCGCGTAGTCGCATTTGCCGCGGT 2532004 Query 133531 AGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTA 133589 ||||||||||| ||||| || ||| |||| ||||||| ||| | || ||||| ||| Sbjct 2532003 CGAGGGCATTTTCTTCAGCGGCA-GTTTTGCTGCTATTTTCTGGTTGAAGAAGCGAGGTC 2531945 Query 133590 TTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGA 133635 || | || ||| || || ||||||||||||||| || ||||| Sbjct 2531944 TTATGCCCGGATTGACGTTCAGTAACGAACTTATTTCTAGAGACGA 2531899 >seq49508 Length=1252472 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 233290 ACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTTGACCTACCCTGGACTGT 233349 ||| || |||||||||||||| | |||| |||||| || || | | ||| | || Sbjct 3144 ACAGTCTCGTTCCATTTCACCCAGCCGCAAACCACCCTCTTTGGCACGACCTTCCGTTGG 3203 Query 233350 TTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATTAATTTTATCTTTAACCAT 233409 |||||||||||| || | ||| ||||| ||||||| | |||||||||| ||||| Sbjct 3204 TTGACGAGTTAACACCGCTCTCGGACCTCGAGCACGTGCGTGCATTTTATCTTGCACCAT 3263 Query 233410 ATGCTTCAGTCTCATATAATA 233430 ||| |||| | | |||||| Sbjct 3264 ATGTTTCAATTTTTGATAATA 3284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470864005697416