Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021344.2 Length=176227 Score E Sequences producing significant alignments: (Bits) Value seq12851 156 5e-33 seq11667 113 5e-20 >seq12851 Length=316 Score = 156 bits (172), Expect = 5e-33 Identities = 208/289 (72%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 41759 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGC 41818 ||||| || || ||| | || || || || || || || | || ||||| | ||| ||| Sbjct 28 GCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGCATCAATGCCGGCCGTATCCGC 87 Query 41819 GCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGG 41878 ||| |||| || || || || ||||| | ||||| || || ||||||| Sbjct 88 GCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATACCGGTTGTATTCCGTTCTAT 147 Query 41879 AAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCA 41938 |||||| | ||||| ||||| ||||||||||| || || || || || || || || || Sbjct 148 AAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCGGCGTGCGCGGCGGCGCGGCC 207 Query 41939 ACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAAC 41998 ||||||| ||||| || ||||||||||| | |||| |||||||| || |||||||| Sbjct 208 ACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTCTGCTGGTGCTAAAAAACAAT 267 Query 41999 AAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGC 42047 || || ||| |||||| | || || ||||||| |||||||||| Sbjct 268 CGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACGGCGTACAGC 316 >seq11667 Length=326 Score = 113 bits (124), Expect = 5e-20 Identities = 184/264 (70%), Gaps = 16/264 (6%) Strand=Plus/Plus Query 43425 TATTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATC 43484 ||||||||||||||| ||| |||||| |||| || |||||||| |||||||| || ||| Sbjct 7 TATTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGGTAGATG 66 Query 43485 TGTCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATT 43544 |||| || || || | ||| | ||||||| || |||||| || || | Sbjct 67 TGTCTCGCGATCGCATCGATTATCAGGCGCTGCCGGAGCACGAAAAACATATCTTTATTA 126 Query 43545 CTAACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCAT 43604 |||||| ||||||| || || |||||| | || ||||| ||| |||| || ||| Sbjct 127 GTAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATGTTG--- 183 Query 43605 TTCTCCCGATTGCCTCTGATGT--AT-----CAATGGAAACGTGGATCGAAACATGGGCG 43657 | | |||||||||||| | || | ||||| ||| | ||||| |||||| Sbjct 184 ----CGCTATTGCCTCTGATTTCGATACCGGAGCTAGAAACCTGGGTGGAAACCTGGGCG 239 Query 43658 TTCAGTGAAACAATTCACAGTCGC 43681 || |||||| || ||| |||| Sbjct 240 TTTTCTGAAACCAT--ACATTCGC 261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563442023031360