Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_021344.2
Length=176227
Score E
Sequences producing significant alignments: (Bits) Value
seq12851 156 5e-33
seq11667 113 5e-20
>seq12851
Length=316
Score = 156 bits (172), Expect = 5e-33
Identities = 208/289 (72%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 41759 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTAAACGCCGGACATATTCGC 41818
||||| || || ||| | || || || || || || || | || ||||| | ||| |||
Sbjct 28 GCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGCATCAATGCCGGCCGTATCCGC 87
Query 41819 GCGATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTTCATACAGGCGTGATCCCGTTCTGG 41878
||| |||| || || || || ||||| | ||||| || || |||||||
Sbjct 88 GCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATACCGGTTGTATTCCGTTCTAT 147
Query 41879 AAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGTGTTCGTGGTGGTGCTGCA 41938
|||||| | ||||| ||||| ||||||||||| || || || || || || || || ||
Sbjct 148 AAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCGGCGTGCGCGGCGGCGCGGCC 207
Query 41939 ACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAAC 41998
||||||| ||||| || ||||||||||| | |||| |||||||| || ||||||||
Sbjct 208 ACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTCTGCTGGTGCTAAAAAACAAT 267
Query 41999 AAAGGTGTTGAAAACAACCGTATCCGTCACCTGGATTATGGCGTACAGC 42047
|| || ||| |||||| | || || ||||||| ||||||||||
Sbjct 268 CGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACGGCGTACAGC 316
>seq11667
Length=326
Score = 113 bits (124), Expect = 5e-20
Identities = 184/264 (70%), Gaps = 16/264 (6%)
Strand=Plus/Plus
Query 43425 TATTTGAAAAGCTGACTGAAAAACAACTGTCATTCTTCTGGCGACCGGAAGAAGTGGATC 43484
||||||||||||||| ||| |||||| |||| || |||||||| |||||||| || |||
Sbjct 7 TATTTGAAAAGCTGATTGAGAAACAATTGTCGTTTTTCTGGCGTCCGGAAGAGGTAGATG 66
Query 43485 TGTCGATTGACCGTATGCAGTATGCGAAAATGCCGGAACATGAAAAAATCATTTTCGATT 43544
|||| || || || | ||| | ||||||| || |||||| || || |
Sbjct 67 TGTCTCGCGATCGCATCGATTATCAGGCGCTGCCGGAGCACGAAAAACATATCTTTATTA 126
Query 43545 CTAACCTGCAATATCAAACCCTACTGGATACCATTCAGGGACGCGGCCCTAACCTTGCAT 43604
|||||| ||||||| || || |||||| | || ||||| ||| |||| || |||
Sbjct 127 GTAACCTCAAATATCAGACGCTGCTGGATTCAATCCAGGGCCGCAGCCCCAATGTTG--- 183
Query 43605 TTCTCCCGATTGCCTCTGATGT--AT-----CAATGGAAACGTGGATCGAAACATGGGCG 43657
| | |||||||||||| | || | ||||| ||| | ||||| ||||||
Sbjct 184 ----CGCTATTGCCTCTGATTTCGATACCGGAGCTAGAAACCTGGGTGGAAACCTGGGCG 239
Query 43658 TTCAGTGAAACAATTCACAGTCGC 43681
|| |||||| || ||| ||||
Sbjct 240 TTTTCTGAAACCAT--ACATTCGC 261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563442023031360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |