Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq5778 111 2e-18 seq48246 87.8 2e-11 >seq5778 Length=780032 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| ||||| | | | ||| | |||||| || || || || || | | || Sbjct 673442 GCTTGGCCAACTCGCCAGGTAGCAACAGCCTCACGGCAGTTTGAATTTCCCGTGAGGTGA 673383 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||| || | |||||||| | | |||||||| | ||||||| |||| || Sbjct 673382 TGGTTGATCGCTTATTGTAATGCGCCAGCCTGGAGGCCTCGGCGGCGATGCGTTCGAACA 673323 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||| || || |||||| | ||||| ||| |||| || || |||||||| Sbjct 673322 CGTCGTTCACGAAGCTGTTCATTATGCTCATCGCTTTGCTGGATATACCGGTGTCGGGGT 673263 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 |||||||||| || |||||||||||| Sbjct 673262 GCACCTGCTTCAGAACCTTGTAGATG 673237 >seq48246 Length=3565318 Score = 87.8 bits (96), Expect = 2e-11 Identities = 136/191 (71%), Gaps = 5/191 (3%) Strand=Plus/Plus Query 869181 CTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCT 869240 ||||||| | | || | |||||| || || | | |||||||| || || ||||||| Sbjct 2531897 CTTCGTCTCTAGAAATAAGTTCGTTACTGAACGTCAATCCGGGCATAAGACCTCGCTTCT 2531956 Query 869241 TGAGCCAAAAGATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 | | ||| || || || ||| |||||||| ||| || ||||||||||| |||||||| Sbjct 2531957 TCAACCAGAAAATAGCAGCA-AAACTGCCGCTGAAGAAAATGCCCTCGACCGCGGCAAAT 2532015 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAG 869359 ||| | ||||||| || ||| | | || | ||| ||||| || | |||||| Sbjct 2532016 GCGACTACGCGCTCGGGGAAAGTGGC---ACTTTCATGGTTTATCCAATTTAATGCCCAG 2532072 Query 869360 TCGGCCTTTTT 869370 | |||||| || Sbjct 2532073 TTGGCCTTCTT 2532083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6102989353110056