Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq48141 273 2e-68
seq36416 91.5 1e-13
seq16708 91.5 1e-13
>seq48141
Length=221708
Score = 273 bits (302), Expect = 2e-68
Identities = 294/389 (76%), Gaps = 0/389 (0%)
Strand=Plus/Minus
Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314
|||||||| ||||| |||||||| ||||| |||| | ||| || ||| || ||
Sbjct 141767 CCGTGATAGCCGCACGCTTTGCATCCCTGCGAGATGGTAGCCTTCTTCGCGCTGACCATC 141708
Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374
||||| ||||| || ||||| || |||| |||| || | || || ||||| || ||
Sbjct 141707 AGCTCGGTCTCGGGATTGTCGCAAGCCGGGCACAGTACGTATTTCCGAATGAATCCGTCC 141648
Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434
| ||||| || | ||| || ||| || || ||||| || ||||||| |||||||||
Sbjct 141647 AAGAGGTCTTGCAGTTTAGTGGCGTCATGCGAACCGTTCACTATGAATCTCTCGTTTTTG 141588
Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494
|||||| ||||| || ||||| |||||||| || ||||| || || |||||| ||||
Sbjct 141587 AAATCGAATTGCGTCTGAGCGCCAAGCTCGCAGCCAAAGTATTTGGTAGGGTAAGTGGCG 141528
Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554
|| | || | ||| || |||| ||| |||||| ||||| || ||||||||||||||
Sbjct 141527 GGTCTGCCGATCGCTTTCGCGACGTCGACCATGTTTACGATCACTGTCTTGATGCCGTTA 141468
Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614
|||||||| |||||||| || ||| |||||||| ||||||||||| ||||| ||
Sbjct 141467 CCCTTTCCCTCGACCTTCGCTTGGATCCGCGGCATCTTGTAGCGGTAAAACGCATCGCTG 141408
Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCAT 34643
|| |||||||| ||||| ||| |||||||
Sbjct 141407 ACGTTGCGGTTCACGTTGACACTCCCCAT 141379
>seq36416
Length=241146
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
|||||||||||||| |||| ||| || ||||| ||||||||| ||||| || | |||
Sbjct 80542 GATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGAT 80601
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| ||||| ||||| || || ||||| || |||||||| | || |||| ||
Sbjct 80602 TATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGG 80654
>seq16708
Length=1145218
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || |||||||| || || || ||||| || || ||| |||| ||| ||
Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
|||||| | | | || || |||||| ||||||||||| | || ||| ||
Sbjct 1010956 CGATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCA 1010897
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|||| |||| || | || || ||||| || || |||| | ||| | | ||||||||
Sbjct 1010896 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1010837
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|| ||||||||||| || |||| | || | | || ||||| ||||
Sbjct 1010836 TATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGGAA 1010787
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || ||||| || || || || |||||||| || ||| |||| ||| ||
Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || || ||| ||||||||||| | || ||| ||
Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1010213
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|||| || | || | || || ||||| || || |||| ||||| | | ||||| ||
Sbjct 1010212 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAA 1010153
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || ||||| || || | || |||| || ||||| |||| ||||
Sbjct 1010152 CATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010103
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412587166754024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |