Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq48141 273 2e-68 seq36416 91.5 1e-13 seq16708 91.5 1e-13 >seq48141 Length=221708 Score = 273 bits (302), Expect = 2e-68 Identities = 294/389 (76%), Gaps = 0/389 (0%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 |||||||| ||||| |||||||| ||||| |||| | ||| || ||| || || Sbjct 141767 CCGTGATAGCCGCACGCTTTGCATCCCTGCGAGATGGTAGCCTTCTTCGCGCTGACCATC 141708 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||||| ||||| || ||||| || |||| |||| || | || || ||||| || || Sbjct 141707 AGCTCGGTCTCGGGATTGTCGCAAGCCGGGCACAGTACGTATTTCCGAATGAATCCGTCC 141648 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 | ||||| || | ||| || ||| || || ||||| || ||||||| ||||||||| Sbjct 141647 AAGAGGTCTTGCAGTTTAGTGGCGTCATGCGAACCGTTCACTATGAATCTCTCGTTTTTG 141588 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 |||||| ||||| || ||||| |||||||| || ||||| || || |||||| |||| Sbjct 141587 AAATCGAATTGCGTCTGAGCGCCAAGCTCGCAGCCAAAGTATTTGGTAGGGTAAGTGGCG 141528 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | || | ||| || |||| ||| |||||| ||||| || |||||||||||||| Sbjct 141527 GGTCTGCCGATCGCTTTCGCGACGTCGACCATGTTTACGATCACTGTCTTGATGCCGTTA 141468 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 |||||||| |||||||| || ||| |||||||| ||||||||||| ||||| || Sbjct 141467 CCCTTTCCCTCGACCTTCGCTTGGATCCGCGGCATCTTGTAGCGGTAAAACGCATCGCTG 141408 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCAT 34643 || |||||||| ||||| ||| ||||||| Sbjct 141407 ACGTTGCGGTTCACGTTGACACTCCCCAT 141379 >seq36416 Length=241146 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 |||||||||||||| |||| ||| || ||||| ||||||||| ||||| || | ||| Sbjct 80542 GATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGAT 80601 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| ||||| || || ||||| || |||||||| | || |||| || Sbjct 80602 TATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGG 80654 >seq16708 Length=1145218 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || |||||||| || || || ||||| || || ||| |||| ||| || Sbjct 1011016 AATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1010957 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || || |||||| ||||||||||| | || ||| || Sbjct 1010956 CGATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCA 1010897 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| |||| || | || || ||||| || || |||| | ||| | | |||||||| Sbjct 1010896 ACAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1010837 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||||||||| || |||| | || | | || ||||| |||| Sbjct 1010836 TATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGGAA 1010787 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || ||||| || || || || |||||||| || ||| |||| ||| || Sbjct 1010332 AATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTC 1010273 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || || ||| ||||||||||| | || ||| || Sbjct 1010272 CGACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1010213 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||| || | || | || || ||||| || || |||| ||||| | | ||||| || Sbjct 1010212 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAA 1010153 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || ||||| || || | || |||| || ||||| |||| |||| Sbjct 1010152 CATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412587166754024