Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq5778 132 8e-25 >seq5778 Length=780032 Score = 132 bits (146), Expect = 8e-25 Identities = 174/241 (72%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| |||||||| |||||||| || || ||| || ||| |||||| ||||| | | Sbjct 673481 TGTATTTGGTGACCGCCTTGGTGCCTTCGCTGACCGCATGCTTGGCCAACTCGCCAGGTA 673422 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||| || || || || || | | ||| || ||||| || Sbjct 673421 GCAACAGCCTCACGGCAGTTTGAATTTCCCGTGAGGTGATGGTTGATCGCTTATTGTAAT 673362 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| | | |||||||| | ||||||| |||| || |||||| || || ||||| Sbjct 673361 GCGCCAGCCTGGAGGCCTCGGCGGCGATGCGTTCGAACACGTCGTTCACGAAGCTGTTCA 673302 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||||| |||| |||| || || |||||||||||||||||| || ||||||| Sbjct 673301 TTATGCTCATCGCTTTGCTGGATATACCGGTGTCGGGGTGCACCTGCTTCAGAACCTTGT 673242 Query 1485710 A 1485710 | Sbjct 673241 A 673241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7910867251199352