Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq36416 105 1e-17 seq16708 89.7 8e-13 >seq36416 Length=241146 Score = 105 bits (116), Expect = 1e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 146132 AGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAG 146191 ||| ||||||||||||||||||||||| |||||||| || |||||||| || ||| || Sbjct 80529 AGGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAG 80588 Query 146192 AACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAG 146251 ||| | | |||||||| || ||||| || || || | ||||| || ||||| || || Sbjct 80589 AACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAG 80648 Query 146252 AGGAGG 146257 ||| || Sbjct 80649 AGGCGG 80654 >seq16708 Length=1145218 Score = 89.7 bits (98), Expect = 8e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || || || ||||| || || || || | || || || | || Sbjct 1011014 TGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCCG 1010955 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||| || || || || ||| |||||||| ||||| || || |||| Sbjct 1010954 ATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCAAC 1010895 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || |||| || || || || |||||| | || ||| | || | | ||||| |||| Sbjct 1010894 AACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATA 1010835 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||||||||| ||| | ||| | ||| Sbjct 1010834 TACAAAAAGAATCCACTCTGCATCTTGTA 1010806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785669464218560