Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq1 210 2e-48
seq48246 163 2e-34
seq12473 131 1e-24
seq14976 93.3 3e-13
>seq1
Length=1408590
Score = 210 bits (232), Expect = 2e-48
Identities = 728/1119 (65%), Gaps = 20/1119 (2%)
Strand=Plus/Minus
Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470
|| |||||||| | || | ||||| | ||||| ||||| || | |||||||| |||
Sbjct 64953 GTAGATTTATCCACCGCGGATACATTCAAGATACCGTTGGCGTCGATGTCAAATGTAACT 64894
Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530
|| || ||||| || ||||| | || || || || || | | |||| | || |
Sbjct 64893 TCGATCTGAGGAACTCCTCTAGGTGCTGGCGGAATACCGCTGAGCTCAAATTTACCTAAC 64834
Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590
||| || || || || | ||||| |||||| | | || || || | |
Sbjct 64833 AGATTGTTGTCCTTCGTCATAGCACGTTCTCCCTCGTACACCTGAATCAACACACCCGGC 64774
Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650
|||||||| | || || || || | || | ||| ||||| || ||||||||
Sbjct 64773 TGATTATCAGCGTAGGTGGTGAAGGTTTGGGTCTGTTTGGTTGGAATGGTGGTGTTTCTC 64714
Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710
| |||| ||||| | ||| ||||| ||||| | |||||||||||| || || ||
Sbjct 64713 TTGATAAGGGCAGTCATGACACCGCCAGCCGTTTCAATACCAAGAGAAAGTGGTGTAACG 64654
Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770
|| | || | | || ||| | || || | | || |||||| || |||||
Sbjct 64653 TCGAGAAGCAGTAGATCTTGTACTTCCTCGGACTTGTCGCCGTGAAGAATGGCGGCTTGT 64594
Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830
| ||||| || || || |||||||| |||||||| | | | || | | || ||
Sbjct 64593 ACGGCAGCTCCGTAAGCTACAGCTTCGTCAGGATTGATGGACTTGTTCAACTCCTTTCCG 64534
Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAA 281889
||||| || | || || | ||| | ||| || ||||| | ||||| ||||| ||
Sbjct 64533 TTGAAGAAGTCCTGCAGCAGCT-TCTGGATCTTGGGGATACGCGTGGATCCACCAACCAA 64475
Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
|| || || || | ||||| || |||| || | ||| | ||| || || ||
Sbjct 64474 AACGATGTCGTGGATCTGTGCCTTGTCCATCTTGGCATCGCGCAGCGATTTCTCTACTGG 64415
Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009
|| ||| |||| || | || | || || |||||||| ||| || || ||
Sbjct 64414 CTCCAGAGTTCCTCTGAAAAGATCAGCGCAGAGCTCTTCGAACCGAGCCCTGGT--GATC 64357
Query 282010 GACAT-TA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 282067
||| | || |||| ||||| ||| ||| ||||| | || || | | |||||| ||
Sbjct 64356 GACGTGTAGAAATCGATTCCCTCGTACAGTGAATCGATCTCGATGCTGGCTTGAGTAGAC 64297
Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG 282125
||||| | || || || |||||||| || || || || || | || | || || ||||
Sbjct 64296 GAAGACAATGTGCGCTTCGCACGTTCGCACGCCGTTCTCAGACGGCGCAGAGCGCGTTTG 64237
Query 282126 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACA 282184
|| | | ||| || | || ||||| | |||||| || | ||| | | || ||||
Sbjct 64236 TTGCTGG--TCAGGTCCTTCTTGTATTTACGCTTGAATTCCTGAACGAAATGAT-TTACC 64180
Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244
| ||| || || |||||||| || || | | ||| | ||||| |||| | || | |
Sbjct 64179 ATACGGTTGTCGAAATCTTCGCCGCCAAGATGAGTGTCTCCTGCTGTAGACTTGACCTCG 64120
Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304
|||| || ||||| | | || || | ||||| ||| ||||| || | |||||
Sbjct 64119 AAAATACCGTCTTCGATCGTCAGAATCGACACATCGAAGGTGCCACCGCCGAGGTCAAAG 64060
Query 282305 ATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAG 282362
|| || || || || ||| ||| || ||||| || ||||| |||| || ||||
Sbjct 64059 ATTAGGACGTTGCGCTCGTTG--GTGGTCTTCTTATCCAGGCCATATGCAATGGCGGCAG 64002
Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422
| || || ||||| || || | || || || | || | || |||| || || || |
Sbjct 64001 CGGTAGGCTCATTGATGATACGTAATACGTTCAAGCCTGAGATGGTTCCAGCGTCCTTGG 63942
Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482
| || || | || || ||||| || || ||||| ||||| || ||||||| || ||
Sbjct 63941 TTGCCTGACGCTGCGAGTCGTTGAAGTAAGCAGGCACAGTGATCACGGCATTGGTGACGA 63882
Query 282483 CTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTT 282519
||| || | || ||||| || |||| ||||||||
Sbjct 63881 TTTTACCGAGGTA--CGCTTCGGCAGTTTCCTTCATTTT 63845
Score = 86.0 bits (94), Expect = 5e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751
|| || || ||| | || || | ||| |||||| |||||||||||| || |||| ||
Sbjct 62965 AAGATGGTGTTGTTGGGGTTCATGGCAACTTGATTTTTGGCTGCATCCCCGATCAACCGT 62906
Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811
|| || || || |||| ||| || || ||||| ||||| ||||||||||| || ||
Sbjct 62905 TCGGTGTCCGTGAATGCAACGTAGCTCGGCGTTGTACGATTTCCTTGATCATTGGCGATG 62846
Query 282812 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871
|| || ||||| || | || | || || || || | || || || | |||||||
Sbjct 62845 ATCTCCACTTTCCCGTGCTGGAACACGCCAACGCAGGAGTACGTGGTGCCAAGATCAATA 62786
Query 282872 CC 282873
||
Sbjct 62785 CC 62784
>seq48246
Length=3565318
Score = 163 bits (180), Expect = 2e-34
Identities = 777/1211 (64%), Gaps = 29/1211 (2%)
Strand=Plus/Plus
Query 281324 TCTTT-AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATT 281382
||||| ||| || | | ||||||||| || | || | || |||| || | ||
Sbjct 614209 TCTTTCAGCCTCGTTCACCATTCTCTCGATGTCGTCCTTCGACAATCGACCCTTGTCGTT 614268
Query 281383 AGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAAT 281442
|| || || || || || |||| || ||||| ||| ||||| ||| || || ||
Sbjct 614269 GGTGATGGTGATCTTGTTCTCTTTGCCAGTCGATTTCTCAATGGCAGACACGTTCAGGAT 614328
Query 281443 ACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGG 281502
|| || || || | || || || ||||| |||||||| || ||||| | || |||||
Sbjct 614329 TCCGTTAGCGTCGATGTCGAACGTAACTTCGATTTGAGGTACGCCTCTAGGCGCGGGTGG 614388
Query 281503 GATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACC 281562
|| || | | | || | || || || || || | || | || || ||
Sbjct 614389 AATGCCGACGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCCTCGTCATAGCTCTCTCTCC 614448
Query 281563 CTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGA 281622
||| | | ||| || || ||| |||||||| ||||| || ||||| ||||
Sbjct 614449 TTCGTACACTTGAATCAGGACGCCAGGCTGATTATCAGAATAGGTGGTAAACG-TCTGAG 614507
Query 281623 TTT-TTTACAAGGAATTGTTGTGTTTCTATCAAT-AATATTGGTCATAATACCACCAGCT 281680
| | ||| || ||||| ||||| || | || ||| ||| |||| | ||| || ||
Sbjct 614508 TCTGTTTGGTTGGTATTGTGGTGTTCCTCTTGATCAATGTTG-TCATCACACCGCCGGCA 614566
Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740
|| || | |||||| || ||||| |||||||| | || | || || ||| | || ||
Sbjct 614567 GTCTCGATACCAAGCGACAGAGGCGTGACATCCAGGAGCAAAAGATCTTGGACTTGCTCC 614626
Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800
| | || || || || || || | ||| ||||| || || ||||| || ||
Sbjct 614627 GACTTGTCGCCGTGGAGGATGGCAGCCTGGACAGCTGCACCGTAGGCGACAGCCTCGTCG 614686
Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC- 281859
||||| | | | || |||| ||| || ||||| |||| | ||| |||| ||| |
Sbjct 614687 GGATTGATGGACTTGTTCAGTTCTTTGCCGTTGAAGAAATCTTGAAGTAGTT-TCTGAAT 614745
Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919
||| || || | | || || || |||| || || ||| ||||| || ||||
Sbjct 614746 CTTTGGTATCCTGGTAGAACCACCGACTAGAACGATGCTATGAACCTGGCTCTTGTCCAT 614805
Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC-TAAACAAGTCTGAAC 281978
|| | ||| | | || || || ||||| | || ||| | |||| || | |
Sbjct 614806 CTTCGCGTCCCGCAGGGCCTTCTCCACCGGTTCCA-ACGTACTCCTGAACAGATCCGCGC 614864
Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 282036
| || || || || | || || |||| | || | || || || | || ||||||||
Sbjct 614865 ATAGCTCCTCAAACCTGGCCCTGGTAACGG--ACGTGTAGAAGTCGACACCCTCGAACAA 614922
Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096
|||||| | || || | | || ||||| || || | | || || | |||||
Sbjct 614923 AGAATCGATCTCGATGCTGGCCTGCGTCGACGAGCTCAGAGTCCTCTTCGCCCTCTCACA 614982
Query 282097 TGCTGTCCTTAGTCTTCGTAAGG---CTTTTGCTGATTGATTCAAATCTGTTTTATATTT 282153
|| || || | | | |||| || ||| | | | ||| ||| | || || ||
Sbjct 614983 GGCCGTTCTCAAGCGCC-TAAGAGCCCTCTTGTTAGT--ACTCAGGTCTTTCTTGTACTT 615039
Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213
|||||||| || | ||| | | || | ||||| || || || || || || |
Sbjct 615040 CCTCTTGAACTCCTGAACGAAGTGGTTGACCATTCGATTGTCGAAGTCCTCGCCACCGAG 615099
Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273
| || | || | ||| | | | |||| ||| | || ||||| | | ||||| |
Sbjct 615100 ATGTGTGTCGCCAGCCGTTGATTTCACTTCGAAGATGCCGTCTTCGATGGTCAAAATCGA 615159
Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--TGG 282331
||||| ||| ||||| |||| || || || | || ||| | || | | ||
Sbjct 615160 CACATCGAAGGTGCCACCTCCCAGGTCGAAGATCAACACGTTCTTCTC---GCCAGATGT 615216
Query 282332 TTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390
||| ||||| |||||||| || | || || ||||||||||| || || || || | |||
Sbjct 615217 TTTCTTATCGAGACCATAAGCGATCGCCGCCGCAGTTGGTTCGTTGATGATCCTTAGAAC 615276
Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450
||| ||||| || || ||| || ||||| |||||||||||||| || || || |||||
Sbjct 615277 ATTCAGACCTGCTATCGCTCCCGCGTCTTTGGTGGCTTGTCTTTGCGAGTCATTGAAATA 615336
Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTT 282508
|| || || || || ||||| | || || || || | ||| ||||| ||||||
Sbjct 615337 CGCTGGTACGGTGATGACGGCGTTGGTAACGGTATTGCCTAAATA--CGCTTCAGCTGTT 615394
Query 282509 TGTTTCATTTT 282519
| ||||| ||
Sbjct 615395 TCCTTCATCTT 615405
>seq12473
Length=36767
Score = 131 bits (144), Expect = 1e-24
Identities = 107/130 (82%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
||||| |||| |||||||| || ||||||||||| | ||| | ||||||||||| |||
Sbjct 22098 CCATATGCAAGGGCAGCAGCCGTCGGTTCATTAATTACTCTAAGTACATTAAGACCGGCA 22157
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
||| || || ||||| || || ||||||||||||||||| ||||||||||| ||||||
Sbjct 22158 ATTTGACCAGCGTCTTTGGTAGCCTGTCTTTGTGAATCGTTGAAATATGCAGGGACAGTA 22217
Query 282464 ATAACGGCAT 282473
|| || ||||
Sbjct 22218 ATTACAGCAT 22227
Score = 89.7 bits (98), Expect = 4e-12
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178
|| |||||||| || || || || ||||||||||||| | |||| |||| | ||| |||
Sbjct 22098 CCATATGCAAGGGCAGCAGCCGTCGGTTCATTAATTACTCTAAGTACATTAAGACCGGCA 22157
Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238
|||| | ||| || || || ||||| |||| || || |||||||| || ||||||
Sbjct 22158 ATTTGACCAGCGTCTTTGGTAGCCTGTCTTTGTGAATCGTTGAAATATGCAGGGACAGTA 22217
Query 86239 ATAACTGCTTTATT 86252
|| || || || ||
Sbjct 22218 ATTACAGCATTCTT 22231
>seq14976
Length=223518
Score = 93.3 bits (102), Expect = 3e-13
Identities = 178/259 (69%), Gaps = 4/259 (2%)
Strand=Plus/Minus
Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343
|| || ||||| | |||||| || || || | | |||| | | || || || |||
Sbjct 190080 GTACCGCCACCAAGATCAAAGATCAGAACGTGCCTTTCACCGCGTCCCTTCTTGTCGAGA 190021
Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403
||||| |||| ||| || ||||| || || ||||| || || | || || | || |
Sbjct 190020 CCATAAGCAATAGCGGCCGCAGTCGGCTCGTTAATGATCCTTAGGACGTTCAAGCCTGAG 189961
Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463
|| | || || ||||| || ||||| | ||| ||||||||||| || || || || ||
Sbjct 189960 ATAGTACCGGCGTCTTTGGTAGCTTGCCGTTGAGAATCGTTAAAGTACGCCGGCACCGTG 189901
Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTAC 282521
|| || || | ||| || |||||| | | |||| ||| || |||| ||||||||
Sbjct 189900 ATTACAGCGTTTGTGACAGATTTTCCCAGA-AAGC-CTTCCGCGGTTTCCTTCATTTTCG 189843
Query 282522 TTAAAATCATTGATGAAAT 282540
| || | ||| || || ||
Sbjct 189842 TCAACACCATCGACGAGAT 189824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3738147724900368
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