Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1 210 2e-48 seq48246 163 2e-34 seq12473 131 1e-24 seq14976 93.3 3e-13 >seq1 Length=1408590 Score = 210 bits (232), Expect = 2e-48 Identities = 728/1119 (65%), Gaps = 20/1119 (2%) Strand=Plus/Minus Query 281411 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 281470 || |||||||| | || | ||||| | ||||| ||||| || | |||||||| ||| Sbjct 64953 GTAGATTTATCCACCGCGGATACATTCAAGATACCGTTGGCGTCGATGTCAAATGTAACT 64894 Query 281471 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 281530 || || ||||| || ||||| | || || || || || | | |||| | || | Sbjct 64893 TCGATCTGAGGAACTCCTCTAGGTGCTGGCGGAATACCGCTGAGCTCAAATTTACCTAAC 64834 Query 281531 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 281590 ||| || || || || | ||||| |||||| | | || || || | | Sbjct 64833 AGATTGTTGTCCTTCGTCATAGCACGTTCTCCCTCGTACACCTGAATCAACACACCCGGC 64774 Query 281591 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 281650 |||||||| | || || || || | || | ||| ||||| || |||||||| Sbjct 64773 TGATTATCAGCGTAGGTGGTGAAGGTTTGGGTCTGTTTGGTTGGAATGGTGGTGTTTCTC 64714 Query 281651 TCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 281710 | |||| ||||| | ||| ||||| ||||| | |||||||||||| || || || Sbjct 64713 TTGATAAGGGCAGTCATGACACCGCCAGCCGTTTCAATACCAAGAGAAAGTGGTGTAACG 64654 Query 281711 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGA 281770 || | || | | || ||| | || || | | || |||||| || ||||| Sbjct 64653 TCGAGAAGCAGTAGATCTTGTACTTCCTCGGACTTGTCGCCGTGAAGAATGGCGGCTTGT 64594 Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 | ||||| || || || |||||||| |||||||| | | | || | | || || Sbjct 64593 ACGGCAGCTCCGTAAGCTACAGCTTCGTCAGGATTGATGGACTTGTTCAACTCCTTTCCG 64534 Query 281831 TTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 ||||| || | || || | ||| | ||| || ||||| | ||||| ||||| || Sbjct 64533 TTGAAGAAGTCCTGCAGCAGCT-TCTGGATCTTGGGGATACGCGTGGATCCACCAACCAA 64475 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 || || || || | ||||| || |||| || | ||| | ||| || || || Sbjct 64474 AACGATGTCGTGGATCTGTGCCTTGTCCATCTTGGCATCGCGCAGCGATTTCTCTACTGG 64415 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 || ||| |||| || | || | || || |||||||| ||| || || || Sbjct 64414 CTCCAGAGTTCCTCTGAAAAGATCAGCGCAGAGCTCTTCGAACCGAGCCCTGGT--GATC 64357 Query 282010 GACAT-TA-TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 282067 ||| | || |||| ||||| ||| ||| ||||| | || || | | |||||| || Sbjct 64356 GACGTGTAGAAATCGATTCCCTCGTACAGTGAATCGATCTCGATGCTGGCTTGAGTAGAC 64297 Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG-GCTTTTG 282125 ||||| | || || || |||||||| || || || || || | || | || || |||| Sbjct 64296 GAAGACAATGTGCGCTTCGCACGTTCGCACGCCGTTCTCAGACGGCGCAGAGCGCGTTTG 64237 Query 282126 CTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAAC-ACACCATGTTACA 282184 || | | ||| || | || ||||| | |||||| || | ||| | | || |||| Sbjct 64236 TTGCTGG--TCAGGTCCTTCTTGTATTTACGCTTGAATTCCTGAACGAAATGAT-TTACC 64180 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 | ||| || || |||||||| || || | | ||| | ||||| |||| | || | | Sbjct 64179 ATACGGTTGTCGAAATCTTCGCCGCCAAGATGAGTGTCTCCTGCTGTAGACTTGACCTCG 64120 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 |||| || ||||| | | || || | ||||| ||| ||||| || | ||||| Sbjct 64119 AAAATACCGTCTTCGATCGTCAGAATCGACACATCGAAGGTGCCACCGCCGAGGTCAAAG 64060 Query 282305 ATAAGTACATTCATTTCTTTGTCTTGG--TTTTTATCAAGACCATACGCAAAAGCAGCAG 282362 || || || || || ||| ||| || ||||| || ||||| |||| || |||| Sbjct 64059 ATTAGGACGTTGCGCTCGTTG--GTGGTCTTCTTATCCAGGCCATATGCAATGGCGGCAG 64002 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 | || || ||||| || || | || || || | || | || |||| || || || | Sbjct 64001 CGGTAGGCTCATTGATGATACGTAATACGTTCAAGCCTGAGATGGTTCCAGCGTCCTTGG 63942 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTT 282482 | || || | || || ||||| || || ||||| ||||| || ||||||| || || Sbjct 63941 TTGCCTGACGCTGCGAGTCGTTGAAGTAAGCAGGCACAGTGATCACGGCATTGGTGACGA 63882 Query 282483 CTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTT 282519 ||| || | || ||||| || |||| |||||||| Sbjct 63881 TTTTACCGAGGTA--CGCTTCGGCAGTTTCCTTCATTTT 63845 Score = 86.0 bits (94), Expect = 5e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 || || || ||| | || || | ||| |||||| |||||||||||| || |||| || Sbjct 62965 AAGATGGTGTTGTTGGGGTTCATGGCAACTTGATTTTTGGCTGCATCCCCGATCAACCGT 62906 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 282811 || || || || |||| ||| || || ||||| ||||| ||||||||||| || || Sbjct 62905 TCGGTGTCCGTGAATGCAACGTAGCTCGGCGTTGTACGATTTCCTTGATCATTGGCGATG 62846 Query 282812 ATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || || ||||| || | || | || || || || | || || || | ||||||| Sbjct 62845 ATCTCCACTTTCCCGTGCTGGAACACGCCAACGCAGGAGTACGTGGTGCCAAGATCAATA 62786 Query 282872 CC 282873 || Sbjct 62785 CC 62784 >seq48246 Length=3565318 Score = 163 bits (180), Expect = 2e-34 Identities = 777/1211 (64%), Gaps = 29/1211 (2%) Strand=Plus/Plus Query 281324 TCTTT-AGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATT 281382 ||||| ||| || | | ||||||||| || | || | || |||| || | || Sbjct 614209 TCTTTCAGCCTCGTTCACCATTCTCTCGATGTCGTCCTTCGACAATCGACCCTTGTCGTT 614268 Query 281383 AGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAAT 281442 || || || || || || |||| || ||||| ||| ||||| ||| || || || Sbjct 614269 GGTGATGGTGATCTTGTTCTCTTTGCCAGTCGATTTCTCAATGGCAGACACGTTCAGGAT 614328 Query 281443 ACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGG 281502 || || || || | || || || ||||| |||||||| || ||||| | || ||||| Sbjct 614329 TCCGTTAGCGTCGATGTCGAACGTAACTTCGATTTGAGGTACGCCTCTAGGCGCGGGTGG 614388 Query 281503 GATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACC 281562 || || | | | || | || || || || || | || | || || || Sbjct 614389 AATGCCGACGAGCTCGAACTTGCCGAGGAGGTTGTTGTCCCTCGTCATAGCTCTCTCTCC 614448 Query 281563 CTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGGA 281622 ||| | | ||| || || ||| |||||||| ||||| || ||||| |||| Sbjct 614449 TTCGTACACTTGAATCAGGACGCCAGGCTGATTATCAGAATAGGTGGTAAACG-TCTGAG 614507 Query 281623 TTT-TTTACAAGGAATTGTTGTGTTTCTATCAAT-AATATTGGTCATAATACCACCAGCT 281680 | | ||| || ||||| ||||| || | || ||| ||| |||| | ||| || || Sbjct 614508 TCTGTTTGGTTGGTATTGTGGTGTTCCTCTTGATCAATGTTG-TCATCACACCGCCGGCA 614566 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | |||||| || ||||| |||||||| | || | || || ||| | || || Sbjct 614567 GTCTCGATACCAAGCGACAGAGGCGTGACATCCAGGAGCAAAAGATCTTGGACTTGCTCC 614626 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | || || || || || || | ||| ||||| || || ||||| || || Sbjct 614627 GACTTGTCGCCGTGGAGGATGGCAGCCTGGACAGCTGCACCGTAGGCGACAGCCTCGTCG 614686 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC- 281859 ||||| | | | || |||| ||| || ||||| |||| | ||| |||| ||| | Sbjct 614687 GGATTGATGGACTTGTTCAGTTCTTTGCCGTTGAAGAAATCTTGAAGTAGTT-TCTGAAT 614745 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 ||| || || | | || || || |||| || || ||| ||||| || |||| Sbjct 614746 CTTTGGTATCCTGGTAGAACCACCGACTAGAACGATGCTATGAACCTGGCTCTTGTCCAT 614805 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC-TAAACAAGTCTGAAC 281978 || | ||| | | || || || ||||| | || ||| | |||| || | | Sbjct 614806 CTTCGCGTCCCGCAGGGCCTTCTCCACCGGTTCCA-ACGTACTCCTGAACAGATCCGCGC 614864 Query 281979 AAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAA 282036 | || || || || | || || |||| | || | || || || | || |||||||| Sbjct 614865 ATAGCTCCTCAAACCTGGCCCTGGTAACGG--ACGTGTAGAAGTCGACACCCTCGAACAA 614922 Query 282037 AGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACA 282096 |||||| | || || | | || ||||| || || | | || || | ||||| Sbjct 614923 AGAATCGATCTCGATGCTGGCCTGCGTCGACGAGCTCAGAGTCCTCTTCGCCCTCTCACA 614982 Query 282097 TGCTGTCCTTAGTCTTCGTAAGG---CTTTTGCTGATTGATTCAAATCTGTTTTATATTT 282153 || || || | | | |||| || ||| | | | ||| ||| | || || || Sbjct 614983 GGCCGTTCTCAAGCGCC-TAAGAGCCCTCTTGTTAGT--ACTCAGGTCTTTCTTGTACTT 615039 Query 282154 TCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAA 282213 |||||||| || | ||| | | || | ||||| || || || || || || | Sbjct 615040 CCTCTTGAACTCCTGAACGAAGTGGTTGACCATTCGATTGTCGAAGTCCTCGCCACCGAG 615099 Query 282214 TTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGT 282273 | || | || | ||| | | | |||| ||| | || ||||| | | ||||| | Sbjct 615100 ATGTGTGTCGCCAGCCGTTGATTTCACTTCGAAGATGCCGTCTTCGATGGTCAAAATCGA 615159 Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT--TGG 282331 ||||| ||| ||||| |||| || || || | || ||| | || | | || Sbjct 615160 CACATCGAAGGTGCCACCTCCCAGGTCGAAGATCAACACGTTCTTCTC---GCCAGATGT 615216 Query 282332 TTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAAC 282390 ||| ||||| |||||||| || | || || ||||||||||| || || || || | ||| Sbjct 615217 TTTCTTATCGAGACCATAAGCGATCGCCGCCGCAGTTGGTTCGTTGATGATCCTTAGAAC 615276 Query 282391 ATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 282450 ||| ||||| || || ||| || ||||| |||||||||||||| || || || ||||| Sbjct 615277 ATTCAGACCTGCTATCGCTCCCGCGTCTTTGGTGGCTTGTCTTTGCGAGTCATTGAAATA 615336 Query 282451 TGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTT 282508 || || || || || ||||| | || || || || | ||| ||||| |||||| Sbjct 615337 CGCTGGTACGGTGATGACGGCGTTGGTAACGGTATTGCCTAAATA--CGCTTCAGCTGTT 615394 Query 282509 TGTTTCATTTT 282519 | ||||| || Sbjct 615395 TCCTTCATCTT 615405 >seq12473 Length=36767 Score = 131 bits (144), Expect = 1e-24 Identities = 107/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| |||||||| || ||||||||||| | ||| | ||||||||||| ||| Sbjct 22098 CCATATGCAAGGGCAGCAGCCGTCGGTTCATTAATTACTCTAAGTACATTAAGACCGGCA 22157 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| || || ||||| || || ||||||||||||||||| ||||||||||| |||||| Sbjct 22158 ATTTGACCAGCGTCTTTGGTAGCCTGTCTTTGTGAATCGTTGAAATATGCAGGGACAGTA 22217 Query 282464 ATAACGGCAT 282473 || || |||| Sbjct 22218 ATTACAGCAT 22227 Score = 89.7 bits (98), Expect = 4e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || |||||||| || || || || ||||||||||||| | |||| |||| | ||| ||| Sbjct 22098 CCATATGCAAGGGCAGCAGCCGTCGGTTCATTAATTACTCTAAGTACATTAAGACCGGCA 22157 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 |||| | ||| || || || ||||| |||| || || |||||||| || |||||| Sbjct 22158 ATTTGACCAGCGTCTTTGGTAGCCTGTCTTTGTGAATCGTTGAAATATGCAGGGACAGTA 22217 Query 86239 ATAACTGCTTTATT 86252 || || || || || Sbjct 22218 ATTACAGCATTCTT 22231 >seq14976 Length=223518 Score = 93.3 bits (102), Expect = 3e-13 Identities = 178/259 (69%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || || ||||| | |||||| || || || | | |||| | | || || || ||| Sbjct 190080 GTACCGCCACCAAGATCAAAGATCAGAACGTGCCTTTCACCGCGTCCCTTCTTGTCGAGA 190021 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||| || ||||| || || ||||| || || | || || | || | Sbjct 190020 CCATAAGCAATAGCGGCCGCAGTCGGCTCGTTAATGATCCTTAGGACGTTCAAGCCTGAG 189961 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || || ||||| || ||||| | ||| ||||||||||| || || || || || Sbjct 189960 ATAGTACCGGCGTCTTTGGTAGCTTGCCGTTGAGAATCGTTAAAGTACGCCGGCACCGTG 189901 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTAC 282521 || || || | ||| || |||||| | | |||| ||| || |||| |||||||| Sbjct 189900 ATTACAGCGTTTGTGACAGATTTTCCCAGA-AAGC-CTTCCGCGGTTTCCTTCATTTTCG 189843 Query 282522 TTAAAATCATTGATGAAAT 282540 | || | ||| || || || Sbjct 189842 TCAACACCATCGACGAGAT 189824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3738147724900368