Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq11667 158 1e-33 >seq11667 Length=326 Score = 158 bits (174), Expect = 1e-33 Identities = 231/324 (71%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 118889 GATGTCATCAAAGACGATCGACGGATCTGCCAGGATGTTACGGATGATATGGGTGTATGA 118948 |||||| || || || | ||||||||| | ||| || |||||||||||||| || || Sbjct 323 GATGTCGTCGAACACCAGCGACGGATCGTTGACGATATTGCGGATGATATGGGTATAGGA 264 Query 118949 GCGAGAGTGGATAGTCTCACTGAACGCCCAAGTCTCTACCCATGTTTCCAGGGTTG-TGT 119007 ||| || || || || ||| |||||||| || || ||||| ||||| || | | | Sbjct 263 GCGCGAATGTATGGTTTCAGAAAACGCCCAGGTTTCCACCCAGGTTTCTAGCTCCGGTAT 204 Query 119008 CGGACACGATCGGGAGCAGAACTGCGTTCGGCCCACGGCCCTGTACAGAATCCAGAAGGA 119067 || | | | || | || | | || || | |||||||| | |||||||| || Sbjct 203 CGAAATC-AGAGGCAATAGCGCAACATTGGGGCTGCGGCCCTGGATTGAATCCAGCAGCG 145 Query 119068 TCTGGTACTTCAGGTTGCTGATGAAGATGTGCTTCTCGTGATCCGGCAGATTCATGTAGT 119127 |||| || || ||||| || || ||||| || || ||||| |||||||| | || | Sbjct 144 TCTGATATTTGAGGTTACTAATAAAGATATGTTTTTCGTGCTCCGGCAGCGCCTGATAAT 85 Query 119128 CGATACGGTCACGGGTCACGTTAACTTCTTCCGGACGCCAGAAGAACGCCAGTTGCTTCT 119187 |||| || || || | ||| | || ||||||||||||||||| |||| || ||| |||| Sbjct 84 CGATGCGATCGCGAGACACATCTACCTCTTCCGGACGCCAGAAAAACGACAATTGTTTCT 25 Query 119188 CGATCAGCTTCTCGAACTTGGCGT 119211 | |||||||| || || || ||| Sbjct 24 CAATCAGCTTTTCAAATATGTCGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476888767948160