Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq35862 87.8 3e-12 >seq35862 Length=1028256 Score = 87.8 bits (96), Expect = 3e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 142977 GAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTTAGG-AGATG 143035 || ||| || | ||| || | | | |||||| || ||||| || || |||| | ||| Sbjct 908801 GAATGGGCTGCCTGGCAAGACAGAGGCGATCCTGTGTTGCACATCGAT-TTAGTCAAATG 908859 Query 143036 GGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAATAGCCAACGG 143095 ||| ||| | || | ||||| || || || ||||| | | ||||| |||| || Sbjct 908860 GGCAGATCTGTTCTTGATAGCCCCACTAGACGCCAATACACTTGGTAAAATGGCCAGTGG 908919 Query 143096 TATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTAT 143155 |||| |||||||| || |||| | | | | | | ||||||||| || || || | Sbjct 908920 TATAAGCGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCTTTGAAGCCACTGGT 908979 Query 143156 TTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTAC 143200 |||||||| |||||||||| |||||||||||||| |||| Sbjct 908980 ATTTTGTCCTGCTATGAATACTAAAATGTGGGAACATCCAGTTAC 909024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902840153780480