Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq17254 89.7 7e-13
seq48457 87.8 2e-12
seq38424 87.8 2e-12
seq32564 87.8 2e-12
seq19759 87.8 2e-12
seq12201 86.0 8e-12
>seq17254
Length=298303
Score = 89.7 bits (98), Expect = 7e-13
Identities = 61/69 (88%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
|||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 55888 ATTCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 55829
Query 8716 TCCCCGACG 8724
|||||| ||
Sbjct 55828 TCCCCGCCG 55820
Score = 82.4 bits (90), Expect = 1e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 55886 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 55827
Query 11789 CCCGACG 11795
|||| ||
Sbjct 55826 CCCGCCG 55820
>seq48457
Length=917100
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/77 (86%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT--AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
|| |||||| |||||||| ||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 481797 CAATCCTCGATAGTATAGCGGTTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 481856
Query 11785 ATTCCCCGACGAGGAGG 11801
|||||||| || |||||
Sbjct 481857 ATTCCCCGTCGGGGAGG 481873
Score = 87.8 bits (96), Expect = 2e-12
Identities = 64/73 (88%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTT-AGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||| |||||||| |||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 481800 TCCTCGATAGTATAGCGGTTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 481859
Query 8717 CCCCGACGAGGAG 8729
||||| || ||||
Sbjct 481860 CCCCGTCGGGGAG 481872
Score = 84.2 bits (92), Expect = 3e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATA-TTAACCACT 139411
|||| || |||||| |||||||||||||||||| | |||| |||||||| | |||| ||
Sbjct 481872 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAACCGCT 481813
Query 139412 ATACTAACGAGGATTTTG 139429
|||||| |||||||| ||
Sbjct 481812 ATACTATCGAGGATTGTG 481795
>seq38424
Length=212
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 8649 ATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGG 8708
||| | | ||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||
Sbjct 84 ATGTCATCTTCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGG 25
Query 8709 GTTCGATTCCCCGACG 8724
||||||||||||| ||
Sbjct 24 GTTCGATTCCCCGCCG 9
Score = 82.4 bits (90), Expect = 1e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|| ||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 75 TCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 16
Query 11789 CCCGACG 11795
|||| ||
Sbjct 15 CCCGCCG 9
>seq32564
Length=387822
Score = 87.8 bits (96), Expect = 2e-12
Identities = 65/76 (86%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 8649 ATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGG 8708
||| | | ||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||
Sbjct 325670 ATGTCATCTTCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGG 325611
Query 8709 GTTCGATTCCCCGACG 8724
||||||||||||| ||
Sbjct 325610 GTTCGATTCCCCGCCG 325595
Score = 82.4 bits (90), Expect = 1e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|| ||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 325661 TCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 325602
Query 11789 CCCGACG 11795
|||| ||
Sbjct 325601 CCCGCCG 325595
>seq19759
Length=438261
Score = 87.8 bits (96), Expect = 2e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 201296 TTCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 201237
Query 8717 CCCCGACG 8724
||||| ||
Sbjct 201236 CCCCGCCG 201229
Score = 82.4 bits (90), Expect = 1e-10
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|| ||| ||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 201295 TCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 201236
Query 11789 CCCGACG 11795
|||| ||
Sbjct 201235 CCCGCCG 201229
>seq12201
Length=3704
Score = 86.0 bits (94), Expect = 8e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand=Plus/Minus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
|||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 2540 AGTCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 2481
Query 11787 TCCCCGACG 11795
|||||| ||
Sbjct 2480 TCCCCGCCG 2472
Score = 86.0 bits (94), Expect = 8e-12
Identities = 59/67 (88%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2538 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2479
Query 8718 CCCGACG 8724
|||| ||
Sbjct 2478 CCCGCCG 2472
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652432136801920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |