Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq17254 89.7 7e-13 seq48457 87.8 2e-12 seq38424 87.8 2e-12 seq32564 87.8 2e-12 seq19759 87.8 2e-12 seq12201 86.0 8e-12 >seq17254 Length=298303 Score = 89.7 bits (98), Expect = 7e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 55888 ATTCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 55829 Query 8716 TCCCCGACG 8724 |||||| || Sbjct 55828 TCCCCGCCG 55820 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 || ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 55886 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 55827 Query 11789 CCCGACG 11795 |||| || Sbjct 55826 CCCGCCG 55820 >seq48457 Length=917100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/77 (86%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT--AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 || |||||| |||||||| ||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 481797 CAATCCTCGATAGTATAGCGGTTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 481856 Query 11785 ATTCCCCGACGAGGAGG 11801 |||||||| || ||||| Sbjct 481857 ATTCCCCGTCGGGGAGG 481873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/73 (88%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTT-AGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||| |||||||| |||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 481800 TCCTCGATAGTATAGCGGTTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 481859 Query 8717 CCCCGACGAGGAG 8729 ||||| || |||| Sbjct 481860 CCCCGTCGGGGAG 481872 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATA-TTAACCACT 139411 |||| || |||||| |||||||||||||||||| | |||| |||||||| | |||| || Sbjct 481872 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGAACCGCT 481813 Query 139412 ATACTAACGAGGATTTTG 139429 |||||| |||||||| || Sbjct 481812 ATACTATCGAGGATTGTG 481795 >seq38424 Length=212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8649 ATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGG 8708 ||| | | ||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||| Sbjct 84 ATGTCATCTTCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGG 25 Query 8709 GTTCGATTCCCCGACG 8724 ||||||||||||| || Sbjct 24 GTTCGATTCCCCGCCG 9 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 || ||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 75 TCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 16 Query 11789 CCCGACG 11795 |||| || Sbjct 15 CCCGCCG 9 >seq32564 Length=387822 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 8649 ATGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGG 8708 ||| | | ||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||| Sbjct 325670 ATGTCATCTTCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGG 325611 Query 8709 GTTCGATTCCCCGACG 8724 ||||||||||||| || Sbjct 325610 GTTCGATTCCCCGCCG 325595 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 || ||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 325661 TCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 325602 Query 11789 CCCGACG 11795 |||| || Sbjct 325601 CCCGCCG 325595 >seq19759 Length=438261 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 ||| ||| |||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 201296 TTCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 201237 Query 8717 CCCCGACG 8724 ||||| || Sbjct 201236 CCCCGCCG 201229 Score = 82.4 bits (90), Expect = 1e-10 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 || ||| ||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 201295 TCTTCGGTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 201236 Query 11789 CCCGACG 11795 |||| || Sbjct 201235 CCCGCCG 201229 >seq12201 Length=3704 Score = 86.0 bits (94), Expect = 8e-12 Identities = 61/69 (88%), Gaps = 1/69 (1%) Strand=Plus/Minus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 |||| ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 2540 AGTCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 2481 Query 11787 TCCCCGACG 11795 |||||| || Sbjct 2480 TCCCCGCCG 2472 Score = 86.0 bits (94), Expect = 8e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 || ||| |||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2538 TCTTCGGTAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2479 Query 8718 CCCGACG 8724 |||| || Sbjct 2478 CCCGCCG 2472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652432136801920