Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq16708 118 1e-21 >seq16708 Length=1145218 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| || ||||| || || || | | | ||||| || Sbjct 654064 AAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCA-TCCTCCAG 654122 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| ||| |||| | |||||||| || ||||| || || |||||||| ||| Sbjct 654123 CTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGAT 654182 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || || | | ||| | |||||| | || || || || | ||||| |||||| | Sbjct 654183 -TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTCC 654241 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||||||||||||||| Sbjct 654242 CTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 105 bits (116), Expect = 6e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || |||||||| | || | | | ||||| | ||||||||| Sbjct 653845 GTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCA-TCCTCTAACTGCTTGCC 653903 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || ||||| || || |||||||| ||| ||| |||| Sbjct 653904 AGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGAT-TTTGGCTT 653962 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | ||| | |||||| | || || || || | ||||| |||||| || || |||| Sbjct 653963 TCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAAGGTGATGGTTTTCCCTGTGAGAG 654022 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||||||||||||||| Sbjct 654023 TCTTTACGAAAATCTGCAT 654041 Score = 105 bits (116), Expect = 6e-18 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| || || || |||||||| | || | | | ||||| | ||||||||| Sbjct 654529 GTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCA-TCCTCTAACTGCTTGCC 654587 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||| || ||||| || || |||||||| ||| ||| |||| Sbjct 654588 AGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGGAT-TTTGGCTT 654646 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | ||| | |||||| | || || || || | ||||| |||||| || || |||| Sbjct 654647 TCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTCCCTGTGAGAG 654706 Query 133642 TTTTTACGAAAATCTGCAT 133660 | ||||||||||||||||| Sbjct 654707 TCTTTACGAAAATCTGCAT 654725 Score = 102 bits (112), Expect = 8e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||| ||||||||||| || || |||||| | ||| || ||||| || Sbjct 1010128 ATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTCGAGTTG 1010187 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 || || ||| | || | || || ||||| ||||| || ||||| ||||| ||| || Sbjct 1010188 TTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCC-TGAATTT 1010246 Query 133577 TTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || |||| | ||| | |||||||| | ||| || |||| ||| | |||||||| | Sbjct 1010247 TGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTTGCCTG 1010306 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 ||| || ||||| ||||||||||| Sbjct 1010307 TCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| ||||| |||||||||||||| | ||| | | | || ||||| || || || Sbjct 1010819 GTGGATTCTTTTTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1010877 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || || || ||||| ||||| || ||||| ||||| ||||| ||| Sbjct 1010878 AGCGAAGATCAGTCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTT 1010937 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||| |||| | ||| || |||| ||| | || ||||| |||| || Sbjct 1010938 GACGTTTTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAACGT 1010997 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 1010998 CTTGACAAAAATCTGCAT 1011015 Score = 96.9 bits (106), Expect = 3e-15 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||||||||||||||| | ||| | | | || ||||| || || || Sbjct 1011047 GTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1011105 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || | || || ||||| ||||| || ||||| ||||| ||| ||| || | Sbjct 1011106 AGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCC-TGAATTTTGGCCT 1011164 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||| |||| | ||| || |||| ||| | || || || |||| || Sbjct 1011165 TGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTTCCAGTCAAAG 1011224 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || ||||||||||| Sbjct 1011225 TCTTGACAAAAATCTGCAT 1011243 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 ||||| || ||||||||||||||||| | ||| | || ||||| || || || Sbjct 1010363 GTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGCCCATCTTCGAGTTGTTTTCCA 1010422 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || || ||||| ||||| || || || ||||| ||||| |||| Sbjct 1010423 GCGAAGATCAGTCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTGAATCTTGGCCTTG 1010482 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||| | ||| |||| | ||| || |||| ||| | || ||||| |||| || Sbjct 1010483 ACATTCTCGATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTCAATGTC 1010542 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 1010543 TTGACAAAAATCTGCAT 1010559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||||||||||||||| | ||| | | | || ||||| || || || Sbjct 1011275 GTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCTTCGAGTTGTTTTCC 1011333 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || | || || ||||| ||||| || ||||| ||||| ||| ||| | || Sbjct 1011334 AGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTC-CTGAATTTTGGCCT 1011392 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||| |||| | ||| || |||| ||| | || ||||| || | | Sbjct 1011393 TGACGTTCTCAATCGTATCGGAAGCCTCAACCTCGAGGGTTATCGTCTTGCCTGTTAACG 1011452 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||| Sbjct 1011453 TCTTGACGAAGATCTGCATG 1011472 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || ||||| ||||| || |||||||| | || | | | ||||| || Sbjct 654292 AAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCA-TCCTCTAG 654350 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || | |||||||| || ||||| || || ||||| || ||| Sbjct 654351 TTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGAT 654410 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | || | ||| || | | || || || | ||||| ||||| | Sbjct 654411 -TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTCC 654469 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||||||||||||||| Sbjct 654470 CTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || |||||||| || |||||||| | || | | | ||||| || Sbjct 654748 AAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCA-TCCTCTAG 654806 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||||| ||| | || | |||||||| || ||||| || || ||||| || ||| Sbjct 654807 TTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGGAT 654866 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | || | ||| || | | || || || | ||||| ||||| | Sbjct 654867 -TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTCC 654925 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||||||||||||||| Sbjct 654926 CTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||||||||||||||| | ||| | | | ||||| |||||||| || Sbjct 1010591 GTGGATTCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCA-TCCTCCAGCTGCTTTCC 1010649 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || | || || || || ||||| || || || ||||| ||| ||| || | Sbjct 1010650 GGCAAAGATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCC-TGAATTTTGGCCT 1010708 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||| || | | ||| || || | |||| || || || |||| | Sbjct 1010709 TGACATTCTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAACG 1010768 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 1010769 TTTTCACAAAAATCTGCAT 1010787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483115229712320