Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_024794.1 Length=167318 Score E Sequences producing significant alignments: (Bits) Value seq12851 100 3e-16 >seq12851 Length=316 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 141903 CCGTAGTCCATATGTCGAATACGGTTTTCATCCACACCTTTGTTATTTTTCAGAACTAAT 141962 ||||| |||||||| || | ||||| | ||||| || || ||||| || || | Sbjct 308 CCGTAATCCATATGCCGCACCCGGTTGGCTTCCACGCCGCGATTGTTTTTTAGCACCAGC 249 Query 141963 AGGTTCTCTACTTCTAAGTGCCACATCGGATAATACGCTGTAGCAGCACCGCCGCGAATA 142022 || | || | || || |||||||| ||||| || || || || |||||||| | Sbjct 248 AGACTTTCGATCTCCAAATGCCACATAGGATAGAACAACGTGGCCGCGCCGCCGCGCACG 189 Query 142023 CCACCTTGAGAACAAGATTTTACTGCAGTTTGGAAATGTTTCCAGAATGGAATAACACCT 142082 || || |||||||| ||||| || || || ||||||||||| |||| |||||| ||| Sbjct 188 CCGCCCTGAGAACAGGATTTGACCGCGGTCTGGAAATGTTTATAGAACGGAATACAACCG 129 Query 142083 GTATG 142087 ||||| Sbjct 128 GTATG 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534951243443840