Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 134 3e-26
seq21718 86.0 1e-11
>seq16708
Length=1145218
Score = 134 bits (148), Expect = 3e-26
Identities = 156/208 (75%), Gaps = 2/208 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || || || || || || ||||| |||||||| || || ||
Sbjct 1010100 CAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTCCGAT 1010041
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||||| || ||||| ||| |||||||| |||||||||||| |||||| ||
Sbjct 1010040 ACCATCGAAAATGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATTCCACCGGACCAGCA 1009982
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
|||| | |||||||| ||||||||||| ||||||||| | || | | ||||| ||| |
Sbjct 1009981 AAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATAACAT 1009922
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379
|||||| ||||| || ||||| || |||
Sbjct 1009921 CCAGAAGGAGTCGACCCTTCATCTCGTT 1009894
Score = 125 bits (138), Expect = 2e-23
Identities = 159/216 (74%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231
||||| ||||| ||| ||| | ||||| |||||||| || | || || || ||| ||
Sbjct 1010328 CAGAT-TTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTCCGA 1010270
Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
||| |||| || ||| || ||||| || |||||||||||| |||||| ||
Sbjct 1010269 CACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACA 1010210
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| || | |||||||| ||||| || | ||||||||||| || | ||||||| ||| |
Sbjct 1010209 ACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAACAT 1010150
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387
|||||||||||| || ||||| || ||| | ||||
Sbjct 1010149 CCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACT 1010114
Score = 123 bits (136), Expect = 6e-23
Identities = 163/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231
||||| ||| | ||| || |||||||| ||||| ||||| |||||||| ||| |||||
Sbjct 654038 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACCATCACCTTGGAAGTCGAAGCCTCTGA 653980
Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290
||| |||| || ||||| ||| || || || || || |||||| || || |
Sbjct 653979 CACGATCGAGAATGTGAAAGCCAAA-ATCCAGGACAAGGAGGGAATTCCTCCTGATCAGC 653921
Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350
| | | |||||||| || |||||||| || |||||| | ||| | | |||||||||
Sbjct 653920 AGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAACA 653861
Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
|||| || ||||| || ||||| || || |||||||||||
Sbjct 653860 TCCAAAAGGAGTCCACGCTTCATCTGGTCCTGAGACTTCGA 653820
Score = 122 bits (134), Expect = 2e-22
Identities = 162/220 (74%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231
||||| ||| | ||| || |||||||| ||||| ||||| ||||||| ||| |||||
Sbjct 654266 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTCTGA 654208
Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290
||| |||| || ||||| ||| || || || || || |||||| || || |
Sbjct 654207 CACGATCGAGAATGTGAAAGCCAAA-ATCCAGGACAAGGAGGGAATTCCTCCTGATCAGC 654149
Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350
| | | || ||||| || |||||| |||| |||||| | |||||| | || ||||||
Sbjct 654148 AGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACAACA 654089
Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| ||||| |||||||||||||| | || ||||||||||
Sbjct 654088 TTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCG 654049
Score = 113 bits (124), Expect = 1e-19
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231
||||| ||| | ||| || |||||||| ||||| ||||| ||||||| ||| ||| ||
Sbjct 654494 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCAGA 654436
Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290
|| ||||| || ||||| ||| || || || || || |||||| || || |
Sbjct 654435 TACGATCGAAAACGTGAAAGCCAAA-ATCCAGGATAAGGAGGGAATTCCTCCTGATCAGC 654377
Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350
| | | |||||||| || ||||| | || |||||| | ||| | | |||||||||
Sbjct 654376 AGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAACA 654317
Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| ||||| |||||||||||||| | || ||||||||||
Sbjct 654316 TTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCG 654277
Score = 113 bits (124), Expect = 1e-19
Identities = 160/220 (73%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231
||||| ||| | ||| || |||||||| ||||| ||||| ||||||| ||| ||| ||
Sbjct 654950 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCAGA 654892
Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290
|| ||||| || ||||| ||| || || || || || |||||| || || |
Sbjct 654891 TACGATCGAAAACGTGAAAGCCAAA-ATCCAGGATAAGGAGGGAATTCCTCCTGATCAGC 654833
Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350
| | | |||||||| || ||||| | || |||||| | ||| | | |||||||||
Sbjct 654832 AGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAACA 654773
Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
| |||||||| ||||||||||| | || ||||||||||
Sbjct 654772 TTCAGAAAGAATCTACTCTTCATTTGGTCCTGAGACTTCG 654733
Score = 111 bits (122), Expect = 4e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| ||| | ||||| || ||||| || | || || || ||| ||
Sbjct 1011012 CAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCCGAT 1010953
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | ||| || ||| ||||||||||| |||||||||||| |||||| |||
Sbjct 1010952 ACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCAACAA 1010893
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|||| |||||||| ||||| || | ||||||||| | || | | |||||||| |
Sbjct 1010892 CGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATATA 1010833
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391
|| ||||| || ||||| || ||||| | | ||||||
Sbjct 1010832 CAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGA 1010794
Score = 104 bits (114), Expect = 6e-17
Identities = 147/207 (71%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| |||||| | || || || || ||||| |||||||| || ||||||
Sbjct 1010784 CAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTCTGAT 1010725
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| || ||||| || ||||| ||||| ||||| |||
Sbjct 1010724 ACGATTGAGAATGTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATCAACAA 1010665
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||| |||||||||||| |||| |||||| | || | | |||||||| |
Sbjct 1010664 CGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACAATATA 1010605
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| || || |||||||| || |||
Sbjct 1010604 CAGAAGGAATCCACTCTTCATCTGGTT 1010578
Score = 91.5 bits (100), Expect = 3e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| || ||| ||| | ||||| || ||||| || | || || || ||| ||
Sbjct 1011468 CAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCCGAT 1011409
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| || ||||| || |||||||||||| |||||| |||
Sbjct 1011408 ACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACAA 1011349
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | |||||||| ||||| || | ||||||||| | || | | |||||||| |
Sbjct 1011348 CGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATATA 1011289
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387
||||| || || |||||||| || ||| | ||||
Sbjct 1011288 CAGAAGGAATCCACTCTTCATCTGGTTCTACGACT 1011254
Score = 89.7 bits (98), Expect = 1e-12
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||| || | || ||||| ||||| || | || || || ||| ||
Sbjct 1011240 CAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTCCGAT 1011181
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| || ||||| || |||||||||||| |||||| |||
Sbjct 1011180 ACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACAA 1011121
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | |||||||| ||||| || | ||||||||| | || | | |||||||| |
Sbjct 1011120 CGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATATA 1011061
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379
||||| || || |||||||| || |||
Sbjct 1011060 CAGAAGGAATCCACTCTTCATCTGGTT 1011034
Score = 86.0 bits (94), Expect = 1e-11
Identities = 82/105 (78%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
|||||||||| || | |||||||||||||| ||||| | || ||||| | ||||||
Sbjct 654049 CGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTA 654108
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856
| |||||| ||||||||||| || ||||| || | || || |||
Sbjct 654109 CGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGA 654153
>seq21718
Length=958615
Score = 86.0 bits (94), Expect = 1e-11
Identities = 137/191 (72%), Gaps = 8/191 (4%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|||||||| ||||| || || || |||||||| || | || || || ||| |||
Sbjct 51267 CAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCCGAC 51208
Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| |||| || |||||||| ||||||||| ||||| |||| | || || |||
Sbjct 51207 ACTATCGAGAATGTGAAAGCAAA-GATTCAAGACAAAGAGGGAA---TCCCACCCGATCA 51152
Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348
| || || ||||| || |||||||| ||||| |||||| | || | ||||||| ||
Sbjct 51151 ACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAA 51092
Query 206349 CGTCCAGAAAG 206359
| | |||||||
Sbjct 51091 CATTCAGAAAG 51081
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181055095349128
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