Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq16708 134 3e-26 seq21718 86.0 1e-11 >seq16708 Length=1145218 Score = 134 bits (148), Expect = 3e-26 Identities = 156/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| |||||||| || || || Sbjct 1010100 CAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTCCGAT 1010041 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| ||| |||||||| |||||||||||| |||||| || Sbjct 1010040 ACCATCGAAAATGTGAAAGCTAAA-ATTCAAGACAAAGAAGGAATTCCACCGGACCAGCA 1009982 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | |||||||| ||||||||||| ||||||||| | || | | ||||| ||| | Sbjct 1009981 AAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATAACAT 1009922 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTT 206379 |||||| ||||| || ||||| || ||| Sbjct 1009921 CCAGAAGGAGTCGACCCTTCATCTCGTT 1009894 Score = 125 bits (138), Expect = 2e-23 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| ||| | ||||| |||||||| || | || || || ||| || Sbjct 1010328 CAGAT-TTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTCCGA 1010270 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || ||| || ||||| || |||||||||||| |||||| || Sbjct 1010269 CACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACA 1010210 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || | |||||||| ||||| || | ||||||||||| || | ||||||| ||| | Sbjct 1010209 ACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAACAT 1010150 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||||||||||| || ||||| || ||| | |||| Sbjct 1010149 CCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACT 1010114 Score = 123 bits (136), Expect = 6e-23 Identities = 163/221 (74%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || |||||||| ||||| ||||| |||||||| ||| ||||| Sbjct 654038 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACCATCACCTTGGAAGTCGAAGCCTCTGA 653980 Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 ||| |||| || ||||| ||| || || || || || |||||| || || | Sbjct 653979 CACGATCGAGAATGTGAAAGCCAAA-ATCCAGGACAAGGAGGGAATTCCTCCTGATCAGC 653921 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | | |||||||| || |||||||| || |||||| | ||| | | ||||||||| Sbjct 653920 AGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAACA 653861 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 |||| || ||||| || ||||| || || ||||||||||| Sbjct 653860 TCCAAAAGGAGTCCACGCTTCATCTGGTCCTGAGACTTCGA 653820 Score = 122 bits (134), Expect = 2e-22 Identities = 162/220 (74%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || |||||||| ||||| ||||| ||||||| ||| ||||| Sbjct 654266 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTCTGA 654208 Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 ||| |||| || ||||| ||| || || || || || |||||| || || | Sbjct 654207 CACGATCGAGAATGTGAAAGCCAAA-ATCCAGGACAAGGAGGGAATTCCTCCTGATCAGC 654149 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | | || ||||| || |||||| |||| |||||| | |||||| | || |||||| Sbjct 654148 AGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACAACA 654089 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| |||||||||||||| | || |||||||||| Sbjct 654088 TTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCG 654049 Score = 113 bits (124), Expect = 1e-19 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || |||||||| ||||| ||||| ||||||| ||| ||| || Sbjct 654494 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCAGA 654436 Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 || ||||| || ||||| ||| || || || || || |||||| || || | Sbjct 654435 TACGATCGAAAACGTGAAAGCCAAA-ATCCAGGATAAGGAGGGAATTCCTCCTGATCAGC 654377 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | | |||||||| || ||||| | || |||||| | ||| | | ||||||||| Sbjct 654376 AGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAACA 654317 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | ||||| |||||||||||||| | || |||||||||| Sbjct 654316 TTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCG 654277 Score = 113 bits (124), Expect = 1e-19 Identities = 160/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||| | ||| || |||||||| ||||| ||||| ||||||| ||| ||| || Sbjct 654950 CAGAT-TTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCAGA 654892 Query 206232 CACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTC 206290 || ||||| || ||||| ||| || || || || || |||||| || || | Sbjct 654891 TACGATCGAAAACGTGAAAGCCAAA-ATCCAGGATAAGGAGGGAATTCCTCCTGATCAGC 654833 Query 206291 AAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACG 206350 | | | |||||||| || ||||| | || |||||| | ||| | | ||||||||| Sbjct 654832 AGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAACA 654773 Query 206351 TCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 | |||||||| ||||||||||| | || |||||||||| Sbjct 654772 TTCAGAAAGAATCTACTCTTCATTTGGTCCTGAGACTTCG 654733 Score = 111 bits (122), Expect = 4e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||| | ||||| || ||||| || | || || || ||| || Sbjct 1011012 CAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCCGAT 1010953 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||||||||| |||||||||||| |||||| ||| Sbjct 1010952 ACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCAACAA 1010893 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| |||||||| ||||| || | ||||||||| | || | | |||||||| | Sbjct 1010892 CGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATATA 1010833 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 || ||||| || ||||| || ||||| | | |||||| Sbjct 1010832 CAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGA 1010794 Score = 104 bits (114), Expect = 6e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||| | || || || || ||||| |||||||| || |||||| Sbjct 1010784 CAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTCTGAT 1010725 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || ||||| || ||||| ||||| ||||| ||| Sbjct 1010724 ACGATTGAGAATGTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATCAACAA 1010665 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| |||||||||||| |||| |||||| | || | | |||||||| | Sbjct 1010664 CGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACAATATA 1010605 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || |||||||| || ||| Sbjct 1010604 CAGAAGGAATCCACTCTTCATCTGGTT 1010578 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| ||| | ||||| || ||||| || | || || || ||| || Sbjct 1011468 CAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCCGAT 1011409 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || ||||| || |||||||||||| |||||| ||| Sbjct 1011408 ACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACAA 1011349 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| ||||| || | ||||||||| | || | | |||||||| | Sbjct 1011348 CGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATATA 1011289 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| || || |||||||| || ||| | |||| Sbjct 1011288 CAGAAGGAATCCACTCTTCATCTGGTTCTACGACT 1011254 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || ||||| ||||| || | || || || ||| || Sbjct 1011240 CAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTCCGAT 1011181 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| || ||||| || |||||||||||| |||||| ||| Sbjct 1011180 ACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAACAA 1011121 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | |||||||| ||||| || | ||||||||| | || | | |||||||| | Sbjct 1011120 CGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAATATA 1011061 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTT 206379 ||||| || || |||||||| || ||| Sbjct 1011060 CAGAAGGAATCCACTCTTCATCTGGTT 1011034 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||||||||| || | |||||||||||||| ||||| | || ||||| | |||||| Sbjct 654049 CGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTA 654108 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||| ||||||||||| || ||||| || | || || ||| Sbjct 654109 CGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGA 654153 >seq21718 Length=958615 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/191 (72%), Gaps = 8/191 (4%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 |||||||| ||||| || || || |||||||| || | || || || ||| ||| Sbjct 51267 CAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCCGAC 51208 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || |||| || |||||||| ||||||||| ||||| |||| | || || ||| Sbjct 51207 ACTATCGAGAATGTGAAAGCAAA-GATTCAAGACAAAGAGGGAA---TCCCACCCGATCA 51152 Query 206292 A-AGACTT--ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 | || || ||||| || |||||||| ||||| |||||| | || | ||||||| || Sbjct 51151 ACAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAA 51092 Query 206349 CGTCCAGAAAG 206359 | | ||||||| Sbjct 51091 CATTCAGAAAG 51081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181055095349128