Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_025414.1 Length=178171 Score E Sequences producing significant alignments: (Bits) Value seq12851 138 1e-27 >seq12851 Length=316 Score = 138 bits (152), Expect = 1e-27 Identities = 204/289 (71%), Gaps = 0/289 (0%) Strand=Plus/Plus Query 41285 GCGATCGTGAAGTATATTTCACAACGTGCTGGTATCGGTGTTAATGCTGGACACATTCGC 41344 ||||| || || ||| | || || || || || || || | ||||| || | || ||| Sbjct 28 GCGATTGTAAAATATGTATCCCAGCGCGCCGGGATAGGCATCAATGCCGGCCGTATCCGC 87 Query 41345 GCAATGGGTTCTAAAATCCGTGGTGGTGAAGCAGTACATACAGGCGTGATCCCGTTCTGG 41404 || |||| || || || || ||||| | ||||| || || ||||||| Sbjct 88 GCGTTGGGGAGCCCGATTCGCGGCGGCGAAGCTTTCCATACCGGTTGTATTCCGTTCTAT 147 Query 41405 AAACATATTCAGACAGCGGTTAAATCCTGTTCACAAGGTGGCGTTCGTGGTGGTGCTGCA 41464 |||||| | ||||| ||||| ||||||||||| || || ||||| || || || || || Sbjct 148 AAACATTTCCAGACCGCGGTCAAATCCTGTTCTCAGGGCGGCGTGCGCGGCGGCGCGGCC 207 Query 41465 ACGTTGTATTATCCGATCTGGCATTTGGAAGTTGAAAACCTGCTGGTTCTGAAAAACAAC 41524 ||||||| ||||| || ||||||||||| | |||| |||||||| || |||||||| Sbjct 208 ACGTTGTTCTATCCTATGTGGCATTTGGAGATCGAAAGTCTGCTGGTGCTAAAAAACAAT 267 Query 41525 AAAGGTGTTGAGAATAACCGCATTCGTCACCTGGATTATGGCGTTCAGC 41573 || || || ||||| | || || ||||||| ||||| |||| Sbjct 268 CGCGGCGTGGAAGCCAACCGGGTGCGGCATATGGATTACGGCGTACAGC 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569658890863680