Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq21718 95.1 1e-14 seq16708 84.2 2e-11 >seq21718 Length=958615 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| |||||||| || ||| | ||| || ||| || | || || || | | ||| Sbjct 51081 CTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAGA 51140 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | | |||||||||||| || || || || ||||| || ||| ||| ||||| | | Sbjct 51141 TCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTCT 51200 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||| |||| | ||| || |||| || | ||||||||| ||||| ||||| | || Sbjct 51201 CGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACGA 51260 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 51261 ATATCTGCAT 51270 >seq16708 Length=1145218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || |||||||||||||| || ||||| ||| || Sbjct 654061 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGACAAAGTACGTCCATCCTCC 654120 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 ||||| || || | | || | |||||| ||||| ||||| || || || || || Sbjct 654121 AGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTGTCCTGG 654180 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | || | || || | | || ||||| | || | ||||| Sbjct 654181 ATTTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAGGGTGATGGTTTTC 654240 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||| |||||||||||| Sbjct 654241 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || ||||||||||| || | || || ||| || Sbjct 654289 ACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654348 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | |||| | |||||| ||||| ||||| || || || ||||| Sbjct 654349 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654408 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | ||| | ||||| | | || ||||| | || | ||||| Sbjct 654409 ATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTC 654468 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||| |||||||||||| Sbjct 654469 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | || ||||| ||||||||||| || | || || ||| || Sbjct 654745 ACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGATAGAGTTCGTCCATCCTCT 654804 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || || | |||| | |||||| ||||| ||||| || || || ||||| Sbjct 654805 AGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTATCCTGG 654864 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| ||||| | ||| | ||||| | | || ||||| | || | ||||| Sbjct 654865 ATTTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCGACTTCCAGGGTGATAGTTTTC 654924 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || ||||| |||| |||||||||||| Sbjct 654925 CCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||| ||| | | | |||||||| || ||||| || ||| | || | |||||| Sbjct 1010122 AACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAAAGCGTTCTTCCATCTTC 1010181 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||| ||||| || | |||| | || ||||| || ||||| || |||||||| || Sbjct 1010182 GAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGAATTCCTTCTTTGTCCTG 1010241 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| || | | || | || |||| | ||| || |||| || | |||||| Sbjct 1010242 AATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAACCTCGAGGGTTATCGTTTT 1010301 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || |||| || |||| ||||||||||| Sbjct 1010302 GCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476309934060480