Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq38726 89.7 2e-14 seq23901 89.7 2e-14 seq46035 86.0 2e-13 >seq38726 Length=73088 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 5641 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 5582 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5581 CCGGGTTTCGGC 5570 >seq23901 Length=891481 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 565686 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 565745 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 565746 CCGGGTTTCGGC 565757 >seq46035 Length=1229184 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||| | | Sbjct 872705 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCGATC 872764 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 872765 CCGGGTTTCGGC 872776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15840833784360