Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq16708 116 3e-21 >seq16708 Length=1145218 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || ||||| || || || |||| || |||| || || || | Sbjct 1010559 ATGCAGATTTTTGTCAAGACATTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1010500 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| |||||| | || || || ||| || |||||||| ||||| || || || Sbjct 1010499 GATACGATCGAGAATGTCAAGGCCAAGATTCAGGACAAAGAGGGAATACCTCCGGACCAA 1010440 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| |||| || | || || |||||||||||||||| | | || ||||||||| Sbjct 1010439 CAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGGCGCACACTCTCTGATTACAAT 1010380 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || |||||||| ||||| | || || || ||||||| |||| Sbjct 1010379 ATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010331 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||| || || || || ||| |||| || |||| || || || | Sbjct 1010331 ATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTCC 1010272 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || |||||| | || || |||||| || ||||| || || || || || || Sbjct 1010271 GACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1010212 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | || || |||||||||||||||| |||| | |||||| || Sbjct 1010211 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAAC 1010152 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| || ||| ||||| | || || || ||||||| |||| Sbjct 1010151 ATCCAGAAAGAGTCGACCCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1010103 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| |||| || |||| || || || | Sbjct 1011243 ATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011184 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || |||||| || ||||| || || || || || || Sbjct 1011183 GATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1011124 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | || || |||||||||||||||| | | || ||||||||| Sbjct 1011123 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAAT 1011064 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || |||||||| ||||| | || || |||||||||| |||| Sbjct 1011063 ATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGGAA 1011015 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| || || || || | ||||| | |||||||| || Sbjct 1010787 ATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTCT 1010728 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || || |||||| || |||||||| ||||| || ||||| Sbjct 1010727 GATACGATTGAGAATGTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGATCAA 1010668 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| || | || | | ||| || || || || |||| | | || ||||||||| Sbjct 1010667 CAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTACAAT 1010608 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || |||||||| ||||| | || || |||||||||| |||| Sbjct 1010607 ATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGGAA 1010559 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || || ||||| || || |||| || |||| || || || Sbjct 1011472 CATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1011413 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || ||| | || || |||||| || ||||| || || || || || || Sbjct 1011412 CGATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1011353 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || | || | || || |||||||||||||||| | | || |||||||| Sbjct 1011352 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1011293 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| || || |||||||| ||||| | || || || ||||||| |||| Sbjct 1011292 TATACAGAAGGAATCCACTCTTCATCTGGTTCTACGACTGAGAGGCGGAA 1011243 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || | || || ||| | ||||| | ||||||||||| Sbjct 654953 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCA 654894 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||||| ||||| ||||| || || || |||||| Sbjct 654893 GATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCAG 654834 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | || ||||| ||||| || |||| ||| | | |||||||| Sbjct 654833 CAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAAC 654774 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| |||||||| || ||||||| || | ||| | | ||||||| Sbjct 654773 ATTCAGAAAGAATCTACTCTTCATTTGGTCCTGAGACTTCGTGGAGGAA 654725 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || | || || ||| | ||||| | ||||||||||| Sbjct 654497 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCA 654438 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| ||||| | || ||| ||||| ||||| ||||| || || || |||||| Sbjct 654437 GATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCAG 654378 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | || ||||| ||||| || |||| ||| | | |||||||| Sbjct 654377 CAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAAC 654318 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| || || || || ||||||| || | ||| | | ||||||| Sbjct 654317 ATTCAGAAGGAGTCTACTCTTCATTTGGTCCTGAGACTTCGTGGAGGAA 654269 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || || || |||| || |||| || || || | Sbjct 1011015 ATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1010956 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || ||||| || || || || || || Sbjct 1010955 GATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCAA 1010896 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||| |||| || | || || |||||||||||||||| | | || ||||||||| Sbjct 1010895 CAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAAT 1010836 Query 25355 ATTCAAAAAGAATCCAC 25371 || |||||||||||||| Sbjct 1010835 ATACAAAAAGAATCCAC 1010819 Score = 84.2 bits (92), Expect = 2e-11 Identities = 162/238 (68%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 25167 TAAACAAC-ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTC 25225 || ||||| ||||| | ||||| || || | || || ||| | ||||| | |||||| Sbjct 655190 TATACAACCATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTC 655131 Query 25226 GAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCG 25285 ||||| || || ||||| | || ||| ||||| ||||| || || || || Sbjct 655130 GAAGCTTCAGACACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAAGGAATTCCT 655071 Query 25286 CCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC 25345 || |||||||| | | || | || ||||| ||||| || |||| | | | || Sbjct 655070 CCTGATCAGCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGTACTCTCTCT 655011 Query 25346 GATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||| || ||||| || ||||| ||||| | || | ||| | | ||||||| Sbjct 655010 GATTACAACATCCAAAAGGAGTCCACGCTTCATCTGGTCCTGAGACTTCGTGGAGGAA 654953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444813055829760