Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5778 100 4e-15 seq48246 89.7 7e-12 >seq5778 Length=780032 Score = 100 bits (110), Expect = 4e-15 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || ||||||||||||||| |||| | || |||| ||| | Sbjct 673238 ATCTACAAGGTTCTGAAGCAGGTGCACCCCGACACCGGT-----AT-ATCCAGCAAAGCG 673291 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| || |||||| || || |||||| || |||| ||||||| | |||||||| Sbjct 673292 ATGAGCATAATGAACAGCTTCGTGAACGACGTGTTCGAACGCATCGCCGCCGAGGCCTCC 673351 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 | ||||||| | ||| ||||| || ||| | | || || || || || |||||| Sbjct 673352 AGGCTGGCGCATTACAATAAGCGATCAACCATCACCTCACGGGAAATTCAAACTGCCGTG 673411 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | ||| | | | ||||| |||||| ||| || ||| ||| ||||||| Sbjct 673412 AGGCTGTTGCTACCTGGCGAGTTGGCCAAGCATGCGGTCAGCGAAGGCACCA 673463 >seq48246 Length=3565318 Score = 89.7 bits (98), Expect = 7e-12 Identities = 140/193 (73%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 1456123 AAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCC-GAG 1456181 || |||||| ||||||| | || ||||| ||| | || | | |||||| || ||| Sbjct 2532083 AAGAAGGCCAACTGGGCATTAAATTGGATAAACCATGAAAGT---GCCACTTTCCCCGAG 2532027 Query 1456182 CGGCTCGTCGGCTTTGCCGCG-TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGC-GCCAT 1456239 || | |||| ||||||||| |||||||||| || ||| |||||||| ||| || || Sbjct 2532026 CGCGTAGTCGCATTTGCCGCGGTCGAGGGCATTTTCTTCAGCGGCAGTTT-TGCTGCTAT 2531968 Query 1456240 CTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCA 1456299 || ||| | |||||||| || || |||||||| || || || |||||| |||| Sbjct 2531967 TTTCTGGTTGAAGAAGCGAGGTCTTATGCCCGG-ATTGACGTTCAGTAACGAACTTATTT 2531909 Query 1456300 GTCGCGACGAAGT 1456312 | | |||||||| Sbjct 2531908 CTAGAGACGAAGT 2531896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7172933823456016