Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq16708 136 4e-27 seq21718 102 7e-17 >seq16708 Length=1145218 Score = 136 bits (150), Expect = 4e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||| |||||||| | ||| |||||| ||||||||||| || | Sbjct 654041 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCG 654100 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || ||||||||||| || || || ||||| |||||||| || | || Sbjct 654101 ACAAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAG 654160 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | |||||||||| ||| ||| || |||| | | | | |||||| | ||| Sbjct 654161 GAATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCG 654219 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || || | ||| || || || |||||||||| Sbjct 654220 ACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATTC 654271 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||| |||| ||| | ||| ||||||||| ||||||||||| | Sbjct 654497 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 654556 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||||| | || || | |||||| || || || ||||| |||||||| || | || Sbjct 654557 ATAGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654616 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | |||||||||| ||| ||| || |||| | | | | |||||| | ||| Sbjct 654617 GAATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCG 654675 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || || | ||| || || || |||||||||| Sbjct 654676 ACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATTC 654727 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||| |||||||| | ||| |||||| |||||||||||||| | Sbjct 654269 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAG 654328 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||||| | || || || ||||| || || || ||||| |||||||| || | || Sbjct 654329 ATAGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654388 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | |||||| ||| ||| ||| || |||| || | | ||| || | ||| Sbjct 654389 GAATTCCCTCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCG 654447 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || || | ||| || || || |||||||||| Sbjct 654448 ACTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATTC 654499 Score = 116 bits (128), Expect = 3e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||| |||| ||| | ||| ||||||||| ||||||||||| | | ||||| | Sbjct 653827 CTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGATAGAGTTCGTCCA 653886 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || || | |||||| || || || ||||| |||||||| || | ||||| | ||||||| Sbjct 653887 TCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGAATTCCCTCCTTG 653946 Query 35642 TCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGAT 35700 ||| ||| ||| || |||| | | | | |||||| | ||| || |||| ||||| Sbjct 653947 TCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGACTTCCAAGGTGAT 654005 Query 35701 CGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||| || || | ||| || || || |||||||||| Sbjct 654006 GGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATTC 654043 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||| |||| ||| | ||| ||||||||| ||||||||||| | Sbjct 654953 TTCCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAG 655012 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || | || || || ||||| || || || ||||| |||||||| || | || Sbjct 655013 AGAGAGTACGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 655072 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||||| ||| ||| ||| || |||| || | | |||||| | ||| Sbjct 655073 GAATTCCTTCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTGTCTGAAGCTTCG 655131 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||| ||||| ||||| || || | ||| || ||||| |||||||| Sbjct 655132 ACTTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 655181 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | |||| |||||||| | ||| || || |||||||||||||| | Sbjct 654725 TTCCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAG 654784 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | ||||| | || || || ||||| || || || ||||| |||||||| || | || Sbjct 654785 ATAGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAG 654844 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | |||||| ||| ||| ||| || |||| || | | ||| || | ||| Sbjct 654845 GAATTCCCTCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCTTCG 654903 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || || | ||| || || || |||||||||| Sbjct 654904 ACTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCATTC 654955 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || |||||||| | | || || | || ||||||||||| || ||||| Sbjct 1010597 TCCTTCTGTATATTGTAATCAGAGAGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAG 1010656 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 || || || || || |||| ||| | | ||| |||||| ||| ||| | ||| | | | Sbjct 1010657 ATTAATCGTTGTTGATCCGGAGGTATTCCCTCTTTGTCC-TGAATTTTGGCCTTGACATT 1010715 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| || | || || |||| ||||| || || || ||||| |||||||| Sbjct 1010716 CTCAATCGTATCAGAAGCCTCGACTTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCAC 1010775 Query 35725 AAATATCTGCATTC 35738 ||| |||||||||| Sbjct 1010776 AAAAATCTGCATTC 1010789 >seq21718 Length=958615 Score = 102 bits (112), Expect = 7e-17 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||| ||||||| | ||| || | || |||| ||||| || ||||| Sbjct 51080 CCTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAG 51139 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| ||||| || || | || | | ||| ||||| |||||| |||| | | Sbjct 51140 ATCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCTTGAATCTTTGCTTTCACATTC 51199 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| | || ||||| | || |||||||||||||||| |||||||| Sbjct 51200 TCGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCACG 51259 Query 35726 AATATCTGCAT 35736 ||||||||||| Sbjct 51260 AATATCTGCAT 51270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450508653365440