Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq10733 140 4e-28 seq2114 104 3e-17 >seq10733 Length=171697 Score = 140 bits (154), Expect = 4e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| |||||||| | |||||| || || || || ||||| | || |||||||| |||| Sbjct 125692 ATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTGGT 125751 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||||||||| | ||||||||||||||| || || || || || || || ||||||||||| Sbjct 125752 ATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATAGG 125811 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATG-TTTCC 68881 || | | ||| ||| |||| || ||| | ||| || ||||| | ||| | || Sbjct 125812 CGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCA-ATGCTGCCC 125870 Query 68882 AATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||||||| | ||| | || ||||||||| | ||||||||| | ||| Sbjct 125871 AATCCCATAAATCCGTAGGCGTAACATTCCACATATCGTATTGCAAAAT 125919 Score = 111 bits (122), Expect = 2e-19 Identities = 217/317 (68%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 69657 TTCATTT-CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTT 69715 || |||| || ||||| ||||||||||| | || || | |||||| | ||||||||||| Sbjct 126629 TTAATTTACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTT 126688 Query 69716 CTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAG 69775 ||| ||| | || | |||| |||| ||||||||||| ||||| | |||| || | Sbjct 126689 CTAAATACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTG 126748 Query 69776 TGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAA 69835 | || ||||| |||| | ||| |||| | |||||| ||| |||| || | || | Sbjct 126749 TATTGTTATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTA 126808 Query 69836 TATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAG 69895 | | || || || | ||| | | | || || || || || || |||| Sbjct 126809 TTGGTGTACCCCTAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTAC 126868 Query 69896 AGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TG 69954 || || ||||| | ||| ||||| ||||| || || | || ||||| || ||| || Sbjct 126869 TAATGAGTGCACATCTTTTTAATGTATCATAAATCCCTTGAATACTATCCTCACTCATTG 126928 Query 69955 TTAAGAAGAAAACAGCT 69971 |||| |||||||| || Sbjct 126929 TTAA-CAGAAAACAACT 126944 Score = 105 bits (116), Expect = 9e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 69505 GTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGA 69564 ||||| ||| ||| ||||| || ||||||||||||| || |||||| |||||| |||| Sbjct 126397 GTATACAGCGTTTCAAATTCTTCACCCCAAACATCATGTAACCCAGGAGATTCATGTGGA 126456 Query 69565 CACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAA 69624 ||||| || ||| ||| ||| || ||||||||||||||||||||| || | ||| Sbjct 126457 CACATTAAACTCCATACACCATTTTCAAAAACTCGTTTCATAAATAGATCAGGCACCCAT 126516 Query 69625 AGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | | | || || | ||||| | |||| ||| || || ||||| Sbjct 126517 A-ACCCGTAGAATAACTCTCTTGCCCTATGTTCCTCCTTGCCTGT 126560 Score = 93.3 bits (102), Expect = 6e-14 Identities = 168/246 (68%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 69256 ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCA 69315 ||||||||||| | || | || || | ||| || || || || |||| | | | | | Sbjct 126079 ACAAACATATTGACAGCAATTGAAGCCAAATTGCATACGGCAACTTCATCCGGACTAGAA 126138 Query 69316 TATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTA 69375 ||||||| || || ||||| | |||||| ||||| || || || | |||||| ||||| Sbjct 126139 TATTGTACAATTTCCGTACACAAATTACTGCATTTAATTGTTCCTATATTTTGATGATTC 126198 Query 69376 CTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGAT 69435 || ||| || ||||| ||||| ||||| ||||| || ||||||| || | Sbjct 126199 GATTTACGGTTGCAATGATCCTTATAAAGCATAAAAGGAGTTCCTGTTTCAACTTGGGCA 126258 Query 69436 TCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTT 69495 | | |||| | |||| | | |||| || | ||| | ||||| | ||||| ||| Sbjct 126259 ACAAGTATAGCTGTCCATAAGTCCCTGGCTTGAATTTGGCGTTTGTATCTTTTCTCATTT 126318 Query 69496 TCATAT 69501 || ||| Sbjct 126319 TCGTAT 126324 Score = 87.8 bits (96), Expect = 2e-12 Identities = 183/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||||||||||| || || ||||| | ||| || | ||| || ||||| || || || Sbjct 127014 CTAGACATTTGCTGTTGCATAGTGCATGCAGAGAAAAGTGTTGGGGATGCATGTGTAAAG 127073 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 | ||| || | | || || ||||| || || || || || ||| | || || Sbjct 127074 TAACGTTCTGATAAAAAGTTATAAGTTTCTATGACTTTATCAATGTCTTCAC-GGTGGAT 127132 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 | | || || | ||| |||||||| ||||| | ||| || ||| |||||||| Sbjct 127133 GGCAACTGCAACTCTCATTAACATATGTTGAGGCCTTTCGACAACTTTTCCCTTTATTTT 127192 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTT 70206 || || || | | || |||||||| || |||||||| || || ||||| ||||| Sbjct 127193 TAATAGATAACTTCTCTCAAGAGTTTTGAAACCAAAATAATTATAACTGAAA--TCTCTA 127250 Query 70207 TCGTAAATAATAACAGAATTTAGTTTAT 70234 || ||||| || ||||||||| ||||| Sbjct 127251 TCATAAATTATTGCAGAATTTAATTTAT 127278 >seq2114 Length=466 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| ||||| || | |||| || |||||||| ||||||||| || ||||| |||| ||| Sbjct 266 ATAAGTTTCGTACGTGCCTTTCTCTTCAGCTAATTCACAACTAGCTTCTAAAGCACTGTA 325 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | ||||| || || | |||| || | ||| || ||| ||| || |||||||| Sbjct 326 ATACAAAGTTTCAAATATTTGAATATTAAGTTTTTGAGCATCTTCACTCTCAAATGGATA 385 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | || ||||||||||||| || |||| |||||||| Sbjct 386 TCGCATTAAAAGGAATGCATCTGCCAGACCTTGAATTCCAATACC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686474604947520