Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq12851 100 3e-16 >seq12851 Length=316 Score = 100 bits (110), Expect = 3e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 143139 CCATAGTCCAGGTGACGAATTCGGTTTTCATCTACGCCTTTGTTGTTCTTAAGTACGAGG 143198 || || |||| || || | ||||| | || ||||| ||||| || || || || Sbjct 308 CCGTAATCCATATGCCGCACCCGGTTGGCTTCCACGCCGCGATTGTTTTTTAGCACCAGC 249 Query 143199 AGATTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACT 143258 ||| | |||| || | |||||| || |||||| |||| || || || || || || || Sbjct 248 AGACTTTCGATCTCCAAATGCCACATAGGATAGAACAACGTGGCCGCGCCGCCGCGCACG 189 Query 143259 CCGCCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCA 143318 ||||| || ||||||||||| || || || ||||| ||||| |||| |||||| || Sbjct 188 CCGCCCTGAGAACAGGATTTGACCGCGGTCTGGAAATGTTTATAGAACGGAATACAACCG 129 Query 143319 GTATG 143323 ||||| Sbjct 128 GTATG 124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544618728761280