Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_027402.1 Length=240413 Score E Sequences producing significant alignments: (Bits) Value seq50200 104 4e-17 >seq50200 Length=540 Score = 104 bits (114), Expect = 4e-17 Identities = 163/228 (71%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 198332 TCATGTCAGCTCTATCAACGCAG-TGCGGATTTTTTCCTCGGCGTGCCGTTCAACATCGC 198390 || |||||||||||||| ||| |||| || ||||||||||| ||||||| || ||||| Sbjct 476 TCCTGTCAGCTCTATCAGCGCTCATGCG-ATATTTTCCTCGGCCTGCCGTTTAATATCGC 418 Query 198391 GTCTTACGCATTACTCGTGCACATGGTTGCCCAGCAGGTTAACATGGTGCCGG---GCGA 198447 || || || || || || ||| | || |||||| | || ||| || | || Sbjct 417 CAGCTATGCCTTGCTGGTACATATGCTGGCGCAGCAG--TGCGAT-TTGCAGGTCTGTGA 361 Query 198448 TTTCATTTGGACGGGCGGTGACACACATCTCTACTCTAATCATCTGGAGCAGGCCAAGCT 198507 |||| | ||||| || || || || ||||||||| ||| ||| || ||||||| | || Sbjct 360 TTTCGTCTGGACCGGAGGCGATACCCATCTCTACAGTAACCATTTGCAGCAGGCGGACCT 301 Query 198508 CCAGCTGACGCGTGAGCCGTTACCTTTACCGAAACTGATCATCAAGCG 198555 ||||| || ||||| || | || | ||| | ||| | || ||||| Sbjct 300 GCAGCTAACCCGTGATCCTCTGCCGCTGCCGCAGCTGCTGATTAAGCG 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 768707392725440