Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq36416 95.1 1e-14 seq48246 86.0 5e-12 >seq36416 Length=241146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062 |||| | || ||| ||| |||||||| || | ||| ||| ||| | |||| || Sbjct 77471 CCGAAGAATCATAATGTCGGCGTGGAATCCGATCGACTTACCAAAAATGACCCTGCCTCC 77412 Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122 ||| || | || ||||||||||| | | || ||| |||| |||||| ||||||| Sbjct 77411 TTGCCACTGTTTCGCACAGTTTTACGTGAACGAAGGAGAATTGTCCTGTCAAATGTATCA 77352 Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182 ||| | || ||||| || || || ||||| || ||||| ||| |||||| | || Sbjct 77351 GAGAAGCGCGGATATGGGTCTGGGCGTACCGTTCAATATAGCATCTTACGCTCTGTTAAC 77292 Query 41183 GTATATGATTGCACACGTTACCAATTTAAA 41212 | ||| | ||||| ||||| |||||||| Sbjct 77291 GCGCATGCTGGCACAAGTTACGAATTTAAA 77262 >seq48246 Length=3565318 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || ||||| |||||||| || || || || || || || |||||| || || ||| Sbjct 2532398 GAGAAACACTTTATATCGCACGTATTAGCATTCTTCGCGGCATCCGACGGTATCGTTAAT 2532339 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | || || ||| |||||||||||| | |||| ||||| ||||| ||| Sbjct 2532338 GAGAATCTCGTAGAACGATTTAGCCAAGAAGTTCAAGTGACAGAGGCACGCTGTTTCTAT 2532279 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || |||||| | || || || || | || || ||||||||| Sbjct 2532278 GGCTTTCAAGTAGCGATGGAGAACGTGCACTCAGAAATGTAC 2532237 Score = 86.0 bits (94), Expect = 5e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| || ||||| ||||| | | |||||| ||||||||||| ||||||||| | Sbjct 2532607 AGATTTGTTGTATTTCCTATTCAGTGGCCTGACATTTGGCAAATGTATAAAAAAGCAGAA 2532548 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 ||||| || ||||| | |||||||| ||| | |||||| Sbjct 2532547 GCGTCCTTCTGGACTGTGGAAGAAGTGGATCTCTCTAAAG 2532508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397211048860840