Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq36416 95.1 1e-14
seq48246 86.0 5e-12
>seq36416
Length=241146
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 41003 CCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACC 41062
|||| | || ||| ||| |||||||| || | ||| ||| ||| | |||| ||
Sbjct 77471 CCGAAGAATCATAATGTCGGCGTGGAATCCGATCGACTTACCAAAAATGACCCTGCCTCC 77412
Query 41063 TTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCA 41122
||| || | || ||||||||||| | | || ||| |||| |||||| |||||||
Sbjct 77411 TTGCCACTGTTTCGCACAGTTTTACGTGAACGAAGGAGAATTGTCCTGTCAAATGTATCA 77352
Query 41123 AAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCAC 41182
||| | || ||||| || || || ||||| || ||||| ||| |||||| | ||
Sbjct 77351 GAGAAGCGCGGATATGGGTCTGGGCGTACCGTTCAATATAGCATCTTACGCTCTGTTAAC 77292
Query 41183 GTATATGATTGCACACGTTACCAATTTAAA 41212
| ||| | ||||| ||||| ||||||||
Sbjct 77291 GCGCATGCTGGCACAAGTTACGAATTTAAA 77262
>seq48246
Length=3565318
Score = 86.0 bits (94), Expect = 5e-12
Identities = 116/162 (72%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888
|| ||||| |||||||| || || || || || || || |||||| || || |||
Sbjct 2532398 GAGAAACACTTTATATCGCACGTATTAGCATTCTTCGCGGCATCCGACGGTATCGTTAAT 2532339
Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948
|| ||| | || || ||| |||||||||||| | |||| ||||| ||||| |||
Sbjct 2532338 GAGAATCTCGTAGAACGATTTAGCCAAGAAGTTCAAGTGACAGAGGCACGCTGTTTCTAT 2532279
Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990
|| |||||| | || || || || | || || |||||||||
Sbjct 2532278 GGCTTTCAAGTAGCGATGGAGAACGTGCACTCAGAAATGTAC 2532237
Score = 86.0 bits (94), Expect = 5e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756
|| ||||| || ||||| ||||| | | |||||| ||||||||||| ||||||||| |
Sbjct 2532607 AGATTTGTTGTATTTCCTATTCAGTGGCCTGACATTTGGCAAATGTATAAAAAAGCAGAA 2532548
Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796
||||| || ||||| | |||||||| ||| | ||||||
Sbjct 2532547 GCGTCCTTCTGGACTGTGGAAGAAGTGGATCTCTCTAAAG 2532508
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397211048860840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |