Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10733 89.7 4e-13 >seq10733 Length=171697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 186/274 (68%), Gaps = 5/274 (2%) Strand=Plus/Plus Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774 |||| || | ||||| | || ||| || || ||||| || |||||||| ||||| |||| Sbjct 126635 TACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAAT 126694 Query 131775 ACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGT 131831 ||| || | ||| ||| | |||| || ||||||| ||||| ||| | | |||| Sbjct 126695 ACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTGT 126754 Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT-TAATGTAG 131890 | ||||| || | ||| || ||||||| || | ||| ||||| || || | Sbjct 126755 TATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGTG 126814 Query 131891 CTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATT 131950 | || | ||||| || || || |||||||||||||| || | ||||| || Sbjct 126815 -TACCCCTAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTACTAATG 126873 Query 131951 AGTGCGCATTTGGTTAGAGTGTTATAGATACCTT 131984 ||||| ||| | ||| || | ||| || |||| Sbjct 126874 AGTGCACATCTTTTTAATGTATCATAAATCCCTT 126907 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 130745 AAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTC 130804 |||||| ||||| || |||||| || || | || ||| | ||| ||||| ||| | Sbjct 125690 AAATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTG 125749 Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864 || | ||||| | ||||| || || || | || |||||||||| || || ||||| Sbjct 125750 GTATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATA 125809 Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCC 130924 || | || | |||||| | || ||||| | | ||| ||| |||||| | || Sbjct 125810 GGCGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCC 125869 Query 130925 CAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTG 130971 |||||||||| | ||||| | ||| ||||||||||| |||| Sbjct 125870 CAATCCCATAAATCCGTAGGCGTAACA---TTCCACATATCGTATTG 125913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424672513991616