Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq10733 89.7 4e-13
>seq10733
Length=171697
Score = 89.7 bits (98), Expect = 4e-13
Identities = 186/274 (68%), Gaps = 5/274 (2%)
Strand=Plus/Plus
Query 131715 TACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774
|||| || | ||||| | || ||| || || ||||| || |||||||| ||||| ||||
Sbjct 126635 TACCAGTATTCTTTTTAAGATCTAAGAATTCGAAAATATCTGCATGCCATGGTTCTAAAT 126694
Query 131775 ACACTGCCATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGT 131831
||| || | ||| ||| | |||| || ||||||| ||||| ||| | | ||||
Sbjct 126695 ACAAAGCAAATGCTCCTGGTCTCTTATTTCCTCCTTGATCAACATATCGAGCTGTATTGT 126754
Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCT-TAATGTAG 131890
| ||||| || | ||| || ||||||| || | ||| ||||| || || |
Sbjct 126755 TATATACTCGAATCATAGGAACCAAACCATTCGATACACCAAACGTGCTAGCTATTGGTG 126814
Query 131891 CTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATT 131950
| || | ||||| || || || |||||||||||||| || | ||||| ||
Sbjct 126815 -TACCCCTAGCTCTTATACAATGTACATTGAGTCCAATACCACCAGCTGATTTACTAATG 126873
Query 131951 AGTGCGCATTTGGTTAGAGTGTTATAGATACCTT 131984
||||| ||| | ||| || | ||| || ||||
Sbjct 126874 AGTGCACATCTTTTTAATGTATCATAAATCCCTT 126907
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/227 (69%), Gaps = 3/227 (1%)
Strand=Plus/Plus
Query 130745 AAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTC 130804
|||||| ||||| || |||||| || || | || ||| | ||| ||||| ||| |
Sbjct 125690 AAATGAGGATTAACGACTTGAAACTCTCCTGACAAGACTCTTCTTGTATAAATATTGTTG 125749
Query 130805 GTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATG 130864
|| | ||||| | ||||| || || || | || |||||||||| || || |||||
Sbjct 125750 GTATATGGTTCTATAGATTCATTATTTCCTAGGATCTGTGCTGTAGACGCTGTTGGCATA 125809
Query 130865 TATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCC 130924
|| | || | |||||| | || ||||| | | ||| ||| |||||| | ||
Sbjct 125810 GGCGCAATTAGCAAAGAATTCCTAACTCCGTGTTTAGCGATCTTTTCTTTCAATGCTGCC 125869
Query 130925 CAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTG 130971
|||||||||| | ||||| | ||| ||||||||||| ||||
Sbjct 125870 CAATCCCATAAATCCGTAGGCGTAACA---TTCCACATATCGTATTG 125913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424672513991616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |