Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_027991.1 Length=147303 Score E Sequences producing significant alignments: (Bits) Value seq30442 327 1e-84 seq34821 118 1e-21 >seq30442 Length=231 Score = 327 bits (362), Expect = 1e-84 Identities = 211/231 (91%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44977 TGACGCGGACTTCCGGGTGTAGCGTACGTCATTCTGCATCGACTTGATCGTGGCGCGCAG 45036 ||||||||||| |||||||| ||||||| ||||||||||||||| | |||||||||||| Sbjct 231 TGACGCGGACTGTCGGGTGTACCGTACGTTATTCTGCATCGACTTAACCGTGGCGCGCAG 172 Query 45037 CTTAGTGATTTCCCGGTCGTGCTCGGTGTTATCATCGGCGTGACGGCGGTGGGCCTCGGA 45096 ||| ||||| |||| |||||||||||||||||| || ||||| ||||| ||||| |||| Sbjct 171 CTTTGTGATCTCCCTGTCGTGCTCGGTGTTATCGTCAGCGTGTCGGCGATGGGCTTCGGC 112 Query 45097 TAACTGGATTTGCAGACTGGTGACAGCGCTTTCCGCCGTATCGAGGCTACGAGTCTTGGT 45156 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 111 CAACTGGATTTGCAGACTGGTGACAGCGCTTTCCGCCGTATCGAGGCTGCGGGTCTTGGT 52 Query 45157 ATCCAGCGCTTCGCGTAGTGCAGCCAGTTCGCCCGGCGTGATGTCGGCGAG 45207 ||||||||||||||||||||| |||||||||||||||||||||| |||||| Sbjct 51 ATCCAGCGCTTCGCGTAGTGCGGCCAGTTCGCCCGGCGTGATGTTGGCGAG 1 >seq34821 Length=220 Score = 118 bits (130), Expect = 1e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 58085 CAGCTGATTAAAGAACACGGCTGTAAAGCGGGGCTGGTATTCAACCCGGCAACGCCGCTC 58144 ||||| ||||| || |||||||| ||||| | ||||| ||||| || || ||||| || Sbjct 1 CAGCTCATTAAGGAGCACGGCTGCAAAGCTGTGCTGGCCTTCAATCCCGCCACGCCACTG 60 Query 58145 AGTTATCTCGATTACGTCATGGACAAACTGGATGTGATCCTGCTGATGTCCGTGAACCCA 58204 || | || || || || |||| ||||| ||| | || |||||||||| || || || Sbjct 61 AGCTGCCTTGAGTATGTGCTGGATAAACTTGATATAATTTTGCTGATGTCGGTCAATCCT 120 Query 58205 GGCTTCGGCGGCCAGTCTTTTATTCCGCAGACGCTGGATAAACTGCGCGAAGTGCGTC 58262 || || || |||||||||||| | || ||| |||||||| ||||| | | ||||| Sbjct 121 GGTTTTGGGGGCCAGTCTTTTCTGCCTTCGACCCTGGATAAGTTGCGCCAGGCGCGTC 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470943728184640