Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq35862 107 2e-18 >seq35862 Length=1028256 Score = 107 bits (118), Expect = 2e-18 Identities = 168/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 89161 CCGATTCAGACGAATGGTTTACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAAC 89220 |||| ||| |||||| | | ||| |||| | ||||||||| ||||| || || Sbjct 908790 CCGACACAGTAGAATGGGCTGCCTGGCAAGACAGAGGCGATCCTGTGTTGCACATCGAT- 908848 Query 89221 TTAGG-AGGTGGGCTGATATATTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAG 89279 |||| | ||||| ||| | || | || || |||||| || ||||| || | || Sbjct 908849 TTAGTCAAATGGGCAGATCTGTTCTTGATAGCCCCACTAGACGCCAATACACTTGGTAAA 908908 Query 89280 ATAGCTAATGGTATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCA 89339 || || | ||||||| |||| || || |||||| | | | | || |||||| | Sbjct 908909 ATGGCCAGTGGTATAAGCGATAATATATTAACTTGTGTTGCACGTGCCTGGGATCCTTTG 908968 Query 89340 AAGCCCCTTATTTTTTGTCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTG 89397 ||||| || | ||||||||||| ||||||||| ||||||||||||||| |||||| Sbjct 908969 AAGCCACTGGTATTTTGTCCTGCTATGAATACTAAAATGTGGGAACATCCAGTTACTG 909026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602799529416320