Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq16708 120 2e-22 seq21718 105 4e-18 seq36416 89.7 3e-13 >seq16708 Length=1145218 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| || || | |||| ||| || || ||| || || ||||||||||| ||| Sbjct 1010105 CCGCCTCTCAGTCGTAGAACCAGATGAAGGGTCGACTCTTTCTGGATGTTATAATCGGAA 1010164 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| | ||||| |||||||| || || || || || || ||||||||||| || Sbjct 1010165 AGCGTTCTTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1010224 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || ||||| ||| ||| | || || | || ||||| ||| || Sbjct 1010225 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTGACATTCTCGATCGTGTCGGAAGCCTCAAC 1010283 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||||||||| || || ||||| || |||||||||||||| Sbjct 1010284 CTCGAGGGTTATCGTTTTGCCTGTCAACGTCTTTACAAAAATCTGCAT 1010331 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| || || | |||| ||| |||||| ||||| || || || ||||| || Sbjct 1011245 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011304 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || || || || || || ||||||||||| || Sbjct 1011305 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011364 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || ||||| ||| ||| | || ||| | ||| || || ||| || Sbjct 1011365 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011423 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | ||||||||| || || |||||||| || || || ||||||||| Sbjct 1011424 CTCGAGGGTTATCGTCTTGCCTGTTAACGTCTTGACGAAGATCTGCATG 1011472 Score = 111 bits (122), Expect = 1e-19 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || |||||||| ||||| |||||| |||||||| ||||| || Sbjct 654271 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAATCAGAT 654330 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || ||||| || || || || || |||||||| || || || || Sbjct 654331 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654390 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | ||||||||| || ||| ||| | ||| ||| | || || ||| ||| || | Sbjct 654391 ATTCCCTCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCT-TCGA 654448 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || ||||| || || | || || || ||||||||||| Sbjct 654449 CTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654497 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | || | |||| ||| |||||| ||||| || || || ||||| || Sbjct 1010561 CCACCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010620 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | || || || || || |||||||| ||||| || ||||| ||||| || Sbjct 1010621 AGTGTGCGTCCATCCTCCAGCTGCTTTCCGGCAAAGATTAATCGTTGTTGATCCGGAGGT 1010680 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | |||||| ||||| ||| ||| | || || | ||| || || ||| || Sbjct 1010681 ATTCCCTCTTTGTCC-TGAATTTTGGCCTTGACATTCTCAATCGTATCAGAAGCCTCGAC 1010739 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || || ||||||||||||||||||||||| Sbjct 1010740 TTCCAATGTGATAGTCTTCCCAGTCAACGTTTTCACAAAAATCTGCAT 1010787 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| | || | |||| ||| |||||| ||||| || || || ||||| || Sbjct 1011017 CCGCCTCTCAATCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1011076 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || || || || || || ||||||||||| || Sbjct 1011077 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAATCGTTGTTGGTCCGGAGGA 1011136 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || ||||| ||| ||| | || ||| | ||| || || ||| || Sbjct 1011137 ATTCCTTCTTTGTC-CTGAATTTTGGCCTTGACGTTCTCAATCGTATCGGAAGCCTCAAC 1011195 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||||||||| || || || || || || |||||||||||||| Sbjct 1011196 CTCGAGGGTTATCGTCTTTCCAGTCAAAGTCTTGACAAAAATCTGCAT 1011243 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| || || | |||| ||| |||||| ||||| || || || ||||| || Sbjct 1010333 CCGCCTCTCAGTCGTAGAACCAGATGAAGAGTGGATTCCTTCTGTATATTGTAATCAGAG 1010392 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| ||| | ||||| |||||||| || || || || | || ||||||||||| || Sbjct 1010393 AGTGTGCGCCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGT 1010452 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||| ||||| ||| || | || || | || || || ||| || Sbjct 1010453 ATTCCCTCTTTGTC-CTGAATCTTGGCCTTGACATTCTCGATCGTATCGGAAGCCTCAAC 1010511 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||||||||| || || || || || || |||||||||||||| Sbjct 1010512 CTCGAGGGTTATCGTCTTGCCTGTCAATGTCTTGACAAAAATCTGCAT 1010559 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| || | || | ||| |||||| || ||||| || || ||||| || Sbjct 1010789 CCACCTCGAAGGCGGAGTACAAGATGCAGAGTGGATTCTTTTTGTATATTGTAATCAGAG 1010848 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| |||||||| || || || || | || ||||||||||| || Sbjct 1010849 AGTGTGCGTCCATCTTCGAGTTGTTTTCCAGCGAAGATCAGTCGTTGTTGGTCCGGAGGA 1010908 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| || | || ||| | ||| || || ||| || Sbjct 1010909 ATTCCTTCTTTGTCT-TGAATCTTGGCCTTGACGTTTTCAATCGTATCGGAAGCCTCAAC 1010967 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | ||||||||| || || || ||||| || |||||||||||||| Sbjct 1010968 CTCGAGGGTTATCGTCTTGCCTGTCAACGTCTTGACAAAAATCTGCAT 1011015 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| | || |||| ||| || ||| ||||||||| ||||| ||||| || Sbjct 653815 CCTCCTCGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 653874 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || | || || || || || || |||||||| || || || || Sbjct 653875 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 653934 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | ||| || | || ||||| | || || Sbjct 653935 ATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 653993 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || ||||| || || | || || || ||||||||||| Sbjct 653994 TTCCAAGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654041 Score = 102 bits (112), Expect = 5e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || |||||||| ||||| || || |||||||| ||||| || Sbjct 654727 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGATTCTTTCTGAATGTTGTAATCAGAT 654786 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || ||||| || || || || || |||||||| || || || || Sbjct 654787 AGAGTTCGTCCATCCTCTAGTTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654846 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTC-GCTCTCCA 34657 | ||||||||| || ||| ||| | ||| ||| | || || ||| ||| || | Sbjct 654847 ATTCCCTCCTTATCCTGGAT-TTTGGCTTTCACGTTTTCGATCGTATCTGAAGCT-TCGA 654904 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| ||| || ||||| || || | || || || ||||||||||| Sbjct 654905 CTTCCAGGGTGATAGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654953 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || |||| ||| || ||| ||||||||| ||||| ||||| || Sbjct 654499 CCTCCACGAAGTCTCAGGACCAGATGAAGCGTGGACTCCTTTTGGATGTTGTAATCAGAT 654558 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || || | || || || || || || |||||||| || || || || Sbjct 654559 AGAGTTCGTCCATCCTCTAACTGCTTGCCAGCGAAGATCAAACGCTGCTGATCAGGAGGA 654618 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | ||| || | || ||||| | || || Sbjct 654619 ATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 654677 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || ||||| || || | || || || ||||||||||| Sbjct 654678 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654725 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| | || |||||||| ||||| |||||| |||||||| || || || Sbjct 654043 CCTCCACGAAGTCTCAGGACCAAATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCCGAC 654102 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || || || || || |||||||| || || || || Sbjct 654103 AAAGTACGTCCATCCTCCAGCTGCTTGCCAGCGAAAATCAAACGCTGCTGATCAGGAGGA 654162 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | |||||||||||| ||| ||| | ||| || | || ||||| | || || Sbjct 654163 ATTCCCTCCTTGTCCTGGAT-TTTGGCTTTCACATTCTCGATCGTGTCAGAGGCTTCGAC 654221 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || ||||| || || | || || || ||||||||||| Sbjct 654222 TTCCAGGGTGATGGTTTTCCCTGTGAGAGTCTTTACGAAAATCTGCAT 654269 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||||| | || | ||| || || |||||| || ||||||||||| ||| Sbjct 1009877 CCTCCTCGGAGACGGAGAACGAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCAGAA 1009936 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | || || || || || || || | || |||||||| || Sbjct 1009937 AGTGTGCGTCCATCTTCTAACTGCTTTCCAGCGAAGATCAATCTTTGCTGGTCCGGTGGA 1009996 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTC-TTCGCTCTCCA 34657 | ||| || |||||| ||| ||| | ||| || | || || || ||| ||| | Sbjct 1009997 ATTCCTTCTTTGTCT-TGAATTTTAGCTTTCACATTTTCGATGGTATCGGACGC-CTCGA 1010054 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||||| || || || || || || | || || |||||||||||||| Sbjct 1010055 CTTCCAATGTGATAGTCTTCCCAGTCAGAGTCTTAACAAAAATCTGCAT 1010103 >seq21718 Length=958615 Score = 105 bits (116), Expect = 4e-18 Identities = 141/192 (73%), Gaps = 3/192 (2%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| |||||||||||||| ||||| || || | || || | ||| || || ||||| Sbjct 51080 CCTTTCTGAATGTTATAATCGGAAAGGGTGCGTCCATCCTCCAATTGCTTTCCAGCAAAG 51139 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT 34635 || ||||||||||| || || || | |||||| |||||| ||| |||| ||| || | Sbjct 51140 ATCAAACGCTGTTGATCGGGTGGGATTCCCTCTTTGTCT-TGAATCTTTGCTTTCACATT 51198 Query 34636 -AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| ||| || || | ||| ||||||||||| || | |||||||| Sbjct 51199 CTCGATAGTGTCGGAAGCCTCTACCTCGAGGGTAATCGTTTTACCCGTCAGGGTTTTCAC 51258 Query 34695 AAAAATCTGCAT 34706 || |||||||| Sbjct 51259 GAATATCTGCAT 51270 >seq36416 Length=241146 Score = 89.7 bits (98), Expect = 3e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||||||||| | || ||||||||||| | ||| ||||||||| ||||||||||| | Sbjct 80656 CGCCGCCTCTCAAGCGTAACACCAAATGTAACGTGGACTCCTTTTGGATGTTATAATCGG 80597 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || |||| | | || || | |||||| |||||||| || | | ||||| || || | Sbjct 80596 ACAGAGTTCTCCCATCCTCCAATTGTTTGCCGGCAAAAATCAGTCTTTGTTGATCGGGTG 80537 Query 34598 GCACTCC 34604 | | ||| Sbjct 80536 GAATTCC 80530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314535632934344