Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq21718 143 2e-29 seq16708 136 3e-27 seq36416 95.1 1e-14 >seq21718 Length=958615 Score = 143 bits (158), Expect = 2e-29 Identities = 147/191 (77%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || ||||| ||||| || || | ||||| || || || || | ||| Sbjct 51270 ATGCAGATATTCGTGAAAACCCTGACGGGTAAAACGATTACCCTCGAGGTAGAGGCTTCC 51211 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || ||| ||| |||||||||||||| || || |||||||||||| Sbjct 51210 GACACTATCGAGAATGTGAAAGCAAAGATTCAAGACAAAGAGGGAATCCCACCCGATCAA 51151 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || |||||||| || | ||| |||||||||| ||| Sbjct 51150 CAGCGTTTGATCTTTGCTGGAAAGCAATTGGAGGATGGACGCACCCTTTCCGATTATAAC 51091 Query 27168 ATTCA-AAAGG 27177 ||||| ||||| Sbjct 51090 ATTCAGAAAGG 51080 >seq16708 Length=1145218 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || |||| ||||| | || || || || || || | ||| Sbjct 1010331 ATGCAGATTTTTGTAAAGACGTTGACAGGCAAAACGATAACCCTCGAGGTTGAGGCTTCC 1010272 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| ||||| |||||||| ||||||||||| || || || || ||| Sbjct 1010271 GACACGATCGAGAATGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1010212 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||| | ||||| | || |||||||||| ||| Sbjct 1010211 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGAAGAACGCTTTCCGATTATAAC 1010152 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || || ||||||||| | ||| ||||| Sbjct 1010151 ATCCAGAAAGAGTCGACCCTTCATCTGGTT 1010122 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| || ||| |||| || | ||||| || ||||| Sbjct 1010103 ATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTCC 1010044 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||||||||||||||||| || ||||| || || Sbjct 1010043 GATACCATCGAAAATGTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCGGACCAG 1009984 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || || || || ||||| | || |||| ||||| ||| Sbjct 1009983 CAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTATAAC 1009924 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||||||| | ||| | ||| | ||| | || || || Sbjct 1009923 ATCCAGAAGGAGTCGACCCTTCATCTCGTTCTCCGTCTCCGAGGAGG 1009877 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| || ||| | || || || || || || | ||| Sbjct 1011243 ATGCAGATTTTTGTCAAGACTTTGACTGGAAAGACGATAACCCTCGAGGTTGAGGCTTCC 1011184 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| ||||| |||||||| ||||||||||| || || || || ||| Sbjct 1011183 GATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCAA 1011124 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || |||||| | ||||| | || | || |||||||| Sbjct 1011123 CAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAAT 1011064 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||| ||||| | || ||| | || || || Sbjct 1011063 ATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGCGGAAT 1011014 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || | || || || ||||| ||| | || Sbjct 654269 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTCT 654210 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || ||| ||||| || ||||| || || || || || ||||| Sbjct 654209 GACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 654150 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| || |||| || | || | || || |||||| Sbjct 654149 CAGCGTTTGATTTTCGCTGGCAAGCAGCTGGAGGATGGACGTACTTTGTCGGACTACAAC 654090 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| || | |||||||| Sbjct 654089 ATTCAGAAGGAGTCTACTCTTCATTTGGT 654061 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || | || || || ||||| ||| | || Sbjct 654725 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCCTCT 654666 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || ||| ||||| || ||||| || || || || || ||||| Sbjct 654665 GACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 654606 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| || || || || | || | || ||||||||| Sbjct 654605 CAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAAC 654546 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | ||| |||| Sbjct 654545 ATCCAAAAGGAGTCCACGCTTCATCTGGT 654517 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| || ||||| || || || | || || || ||||| ||| | | Sbjct 655183 CCATGCAGATCTTTGTCAAGACTCTCACAGGGAAAACCATCACCCTGGAAGTCGAAGCTT 655124 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | || ||| ||||| || || || ||||| || || || |||| Sbjct 655123 CAGACACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAAGGAATTCCTCCTGATC 655064 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | |||||||| || | ||| ||||| ||| | || || | || | || ||||||| Sbjct 655063 AGCAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGTACTCTCTCTGATTACA 655004 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGT 27196 |||| ||||||||||| || | ||| |||| Sbjct 655003 ACATCCAAAAGGAGTCCACGCTTCATCTGGT 654973 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || | || || | ||||| ||| | || Sbjct 654041 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACCATCACCTTGGAAGTCGAAGCCTCT 653982 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| |||| || ||| ||||| || ||||| || || || || || ||||| Sbjct 653981 GACACGATCGAGAATGTGAAAGCCAAAATCCAGGACAAGGAGGGAATTCCTCCTGATCAG 653922 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| || || || || | || | || ||||||||| Sbjct 653921 CAGCGTTTGATCTTCGCTGGCAAGCAGTTAGAGGATGGACGAACTCTATCTGATTACAAC 653862 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || ||||||||||| || | ||| |||| Sbjct 653861 ATCCAAAAGGAGTCCACGCTTCATCTGGT 653833 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || |||| || || ||||| ||| | || Sbjct 654497 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCA 654438 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || ||| ||||| || || || || || || || || ||||| Sbjct 654437 GATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCAG 654378 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| ||| | || || | || | || ||||||||| Sbjct 654377 CAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAAC 654318 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| |||||||| || | |||||||| Sbjct 654317 ATTCAGAAGGAGTCTACTCTTCATTTGGT 654289 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || | || |||||| | || || || || || || | || Sbjct 1011472 CATGCAGATCTTCGTCAAGACGTTAACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTC 1011413 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||||||| ||||| |||||||| ||||||||||| || || || || || Sbjct 1011412 CGATACGATTGAGAACGTCAAGGCCAAAATTCAGGACAAAGAAGGAATTCCTCCGGACCA 1011353 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| || || || | ||| || |||||| | ||||| | || | || |||||||| Sbjct 1011352 ACAACGATTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAA 1011293 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || || ||||| || || | ||| ||||| Sbjct 1011292 TATACAGAAGGAATCCACTCTTCATCTGGTT 1011262 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| || || || |||| || || ||||| ||| | || Sbjct 654953 ATGCAGATTTTCGTAAAGACTCTCACAGGGAAAACTATCACCCTGGAAGTCGAAGCTTCA 654894 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || ||| ||||| || || || || || || || || ||||| Sbjct 654893 GATACGATCGAAAACGTGAAAGCCAAAATCCAGGATAAGGAGGGAATTCCTCCTGATCAG 654834 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| ||||| ||| | || || | || | || ||||||||| Sbjct 654833 CAGCGTTTGATCTTCGCTGGCAAGCAACTAGAGGATGGACGAACTCTATCTGATTACAAC 654774 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 ||||| || || || || | |||||||| Sbjct 654773 ATTCAGAAAGAATCTACTCTTCATTTGGT 654745 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || |||| |||||| | || || || || || || | ||| Sbjct 1011015 ATGCAGATTTTTGTCAAGACGTTGACAGGCAAGACGATAACCCTCGAGGTTGAGGCTTCC 1010956 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | ||||| || ||||||||||||||||| || || || || ||| Sbjct 1010955 GATACGATTGAAAACGTCAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCGGACCAA 1010896 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || | || | ||| || |||||| | ||||| | || | || |||||||| Sbjct 1010895 CAACGACTGATCTTCGCTGGAAAACAACTCGAAGATGGACGCACACTCTCTGATTACAAT 1010836 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||| || || || | ||| | || | || | || ||||| || Sbjct 1010835 ATACAAAAAGAATCCACTCTGCATCTTGTACTCCGCCTTCGAGGTGGAAT 1010786 >seq36416 Length=241146 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || |||||||||||||| | | || | ||||||||||||||||| || | Sbjct 80529 AGGAATTCCACCCGATCAACAAAGACTGATTTTTGCCGGCAAACAATTGGAGGATGGGAG 80588 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | |||||||| ||||| ||||||||||| || ||||||||||| || || ||| | Sbjct 80589 AACTCTGTCCGATTATAACATCCAAAAGGAGTCCACGTTACATTTGGTGTTACGCTTGAG 80648 Query 27209 GGGTGGC 27215 || ||| Sbjct 80649 AGGCGGC 80655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434643488079360