Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq10258 98.7 4e-16 seq3379 93.3 2e-14 >seq10258 Length=339 Score = 98.7 bits (108), Expect = 4e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 53636 ATTTCGCCGATACCCTTCCTGTCGCTGTTCGGGAAATAGACTTCATCGCGGTACACGAAC 53695 ||||| ||||||| ||| | ||||| ||| | |||||| ||||| ||||| | ||| Sbjct 155 ATTTCAGCGATACCTTTCATATCGCTATTCTCGTGATAGACCTCATCACGGTAGATAAAC 96 Query 53696 ATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGCAGGTCGCTGAGGACCGGA 53755 |||| | |||||||| ||||| || | |||||||||||||||||| | || ||| Sbjct 95 ATGATCAGATCGGCGTCCTGCTCGATAGAACCGGACTCGCGCAGGTCGGAGTTTACGGGA 36 Query 53756 CGCTTGTCGGGGCG 53769 ||||| |||| ||| Sbjct 35 CGCTTATCGGCGCG 22 >seq3379 Length=438 Score = 93.3 bits (102), Expect = 2e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7276 AGAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTAC 7335 ||||| ||||| ||||| ||||| || || ||| | || || |||||| |||||| Sbjct 169 AGAGGCGTTAATAAAGTGATTCTAGTCGGAAACCTGGGCCAGGATCCGGAAGTCCGCTAT 110 Query 7336 ATGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGAC 7395 ||||| || || |||||| ||||||| || || ||||| ||||||||| ||| Sbjct 109 ATGCCTAATGGTGGTGCGGTAGCCAACATTACGCTGGCCACTTCGGAGAGCTGGCGCGAC 50 Query 7396 AAGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGT 7444 ||||| |||||| || | |||| | || | ||||||||||||| Sbjct 49 AAGCAAACCGGCGAGACAAAGGAGAAAACGGAATGGCACCGCGTGGTGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194702212044496