Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq12851 109 6e-19 >seq12851 Length=316 Score = 109 bits (120), Expect = 6e-19 Identities = 182/263 (69%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 18439 CGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTCAAGTTCGCTCT 18498 ||||| || || || || || || || || || || ||| || || | ||||| Sbjct 52 CGCGCCGGGATAGGCATCAATGCCGGCCGTATCCGCGCGTTGGGGAGCCCGATTCGCGGC 111 Query 18499 GGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGACTGCTGTTAAA 18558 || |||| || || ||| |||||| |||| |||||||||||||| || || ||| Sbjct 112 GGCGAAGCTTTCCATACCGGTTGTATTCCGTTCTATAAACATTTCCAGACCGCGGTCAAA 171 Query 18559 TCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATCCTATGTGGCAT 18618 || ||||| || ||||| || || || || ||||| || ||| ||||||||||||||| Sbjct 172 TCCTGTTCTCAGGGCGGCGTGCGCGGCGGCGCGGCCACGTTGTTCTATCCTATGTGGCAT 231 Query 18619 CTTGAATTCGAAAAGCTGATTGTTCTGAAAAATAACAAAGGTGTTGATGAAAACCGCATT 18678 | || |||||| ||| | || || ||||| || || || || | ||||| | Sbjct 232 TTGGAGATCGAAAGTCTGCTGGTGCTAAAAAACAATCGCGGCGTGGAAGCCAACCGGGTG 291 Query 18679 CGTCAGCTTGATTATGGTCTACA 18701 || || | ||||| || |||| Sbjct 292 CGGCATATGGATTACGGCGTACA 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582367652574400