Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25] 50,568 sequences; 199,936,949 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq16708 95.1 9e-15 seq36416 86.0 4e-12 >seq16708 Length=1145218 Score = 95.1 bits (104), Expect = 9e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||||||||| | |||||||| ||| ||| | || ||||| | Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || |||| | ||| ||||| ||||| |||||||| || | || ||| Sbjct 1010728 TGATACGATTGAGAAT--GTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGAT 1010671 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || ||||| ||||| ||||||||||| || |||| || | ||||| | || |||||| Sbjct 1010670 CAACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTAC 1010611 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || || || || |||| | ||| ||||| | || ||| | || || Sbjct 1010610 AATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGG 1010561 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| |||||||| || ||||| |||||||| ||| ||| | || ||||| | Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || | ||| || ||| ||||| ||||||||||| |||| ||| Sbjct 1010044 CGATACCATCGAAAAT--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCGGAC 1009987 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| | || || || || ||||| || || || || | ||||| | || ||||| Sbjct 1009986 CAGCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTAT 1009927 Query 27967 AACATCCAAAAAGAG 27981 |||||||| || ||| Sbjct 1009926 AACATCCAGAAGGAG 1009912 >seq36416 Length=241146 Score = 86.0 bits (94), Expect = 4e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 27919 ATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAA 27978 ||||||||||| ||||||||||| || | | | |||||||||| ||||||||||| Sbjct 80557 ATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGATTATAACATCCAAAAG 80616 Query 27979 GAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||| ||| || |||||||| || || ||| | ||||||| Sbjct 80617 GAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGGCG 80656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355643082892536