Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratina_20calcarata_20[refseq_20GCF_5F001652005.1_202016-05-25]
50,568 sequences; 199,936,949 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq16708 95.1 9e-15
seq36416 86.0 4e-12
>seq16708
Length=1145218
Score = 95.1 bits (104), Expect = 9e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| |||||||||||||| | |||||||| ||| ||| | || ||||| |
Sbjct 1010788 AATGCAGATTTTTGTGAAAACGTTGACTGGGAAGACTATCACATTGGAAGTCGAGGCTTC 1010729
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
|| |||| | ||| ||||| ||||| |||||||| || | || |||
Sbjct 1010728 TGATACGATTGAGAAT--GTCAAGGCCAAAATTCAGGACAAAGAGGGAATACCTCCGGAT 1010671
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|| ||||| ||||| ||||||||||| || |||| || | ||||| | || ||||||
Sbjct 1010670 CAACAACGATTAATCTTTGCCGGAAAGCAGCTGGAGGATGGACGCACACTCTCTGATTAC 1010611
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || || || || |||| | ||| ||||| | || ||| | || ||
Sbjct 1010610 AATATACAGAAGGAATCCACTCTTCATCTGGTTCTACGATTGAGAGGTGG 1010561
Score = 86.0 bits (94), Expect = 4e-12
Identities = 137/195 (70%), Gaps = 4/195 (2%)
Strand=Plus/Minus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
|||||| |||||||| || ||||| |||||||| ||| ||| | || ||||| |
Sbjct 1010104 AATGCAGATTTTTGTTAAGACTCTGACTGGGAAGACTATCACATTGGAAGTCGAGGCGTC 1010045
Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
||| | || | ||| || ||| ||||| ||||||||||| |||| |||
Sbjct 1010044 CGATACCATCGAAAAT--GTGAAAGCTAAAATTCAAGACAAAGAAGGAATTCCACCGGAC 1009987
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||| | || || || || ||||| || || || || | ||||| | || |||||
Sbjct 1009986 CAGCAAAGATTGATCTTCGCTGGAAAGCAGTTAGAAGATGGACGCACACTTTCTGATTAT 1009927
Query 27967 AACATCCAAAAAGAG 27981
|||||||| || |||
Sbjct 1009926 AACATCCAGAAGGAG 1009912
>seq36416
Length=241146
Score = 86.0 bits (94), Expect = 4e-12
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 27919 ATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAA 27978
||||||||||| ||||||||||| || | | | |||||||||| |||||||||||
Sbjct 80557 ATTTTTGCCGGCAAACAATTGGAGGATGGGAGAACTCTGTCCGATTATAACATCCAAAAG 80616
Query 27979 GAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018
||| ||| || |||||||| || || ||| | |||||||
Sbjct 80617 GAGTCCACGTTACATTTGGTGTTACGCTTGAGAGGCGGCG 80656
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355643082892536
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |